Query= MSMg01no158_p14.b1 MSMg01no158_p14.b1 CHROMAT_FILE:
MSMg01no158_p14.b1 PHD_FILE: MSMg01no158_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:36 2005
(316 letters)
>mm_chr9_81452072_81452787
Length = 716
Score = 371 bits (192), Expect = e-107
Identities = 266/298 (89%), Gaps = 16/298 (5%)
Strand = Plus / Minus
Query: 5 gaattcatctgtagacgtcacaaaggcaaggctcacattctgtgcttataggctcttaca 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaattcatctgtagatgtcacaaaggcaaggctcacattctgtgcttataggctcttaca 281
Query: 65 gtttcacatacagccacagaatttgtgacgcgtgtggctgaaagcactgtagcaggagac 124
|| ||||||||| |||||||||||||| || |||||| |||||||||||||||||||||
Sbjct: 280 gtcccacatacagacacagaatttgtgatgcatgtggcggaaagcactgtagcaggagac 221
Query: 125 acatagcgctcatgcta----tggcaggg--catgtttctctttatcctgtccagaactc 178
||||||| |||||||| ||| ||| | ||||||||||||| |||||||||||||
Sbjct: 220 acatagcactcatgctgggggtgg--gggtgcgtgtttctctttattctgtccagaactc 163
Query: 179 ctggggggggggttgtagctaagatgcttctgttatagtcagagatgccaaggttatgct 238
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 162 ctgggggga---ttgtagctaagatgcttctgttttagtcagaggggccaaggttatgct 106
Query: 239 ttagtgtggcatagcttttcttttcttttattatatatatatatatatatatatatat 296
||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 105 ttagtgtggcatagcttttatttt-----attatatatatatatatatatatatatat 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_p14.g1 MSMg01no158_p14.g1 CHROMAT_FILE:
MSMg01no158_p14.g1 PHD_FILE: MSMg01no158_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:36 2005
(660 letters)
>mm_chr9_81300420_81301481
Length = 1062
Score = 1183 bits (612), Expect = 0.0
Identities = 641/652 (98%), Gaps = 5/652 (0%)
Strand = Plus / Plus
Query: 1 ttaataaaggtgacaaagggacaaagaccccctttaatgtactgtgatggaaaaatgcaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaataatggtgacaaagggacaaagaccccctttaatgtactgtgatggaaaaatgcaa 260
Query: 61 gtaatcatttaatcctctgaaaaattctagaaaattgagtcttatggtgagaagactggt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaatcatttaattctctgaaaaattctagaaaattgagtcttatggtgagaagactggt 320
Query: 121 agatt---aaaaaaacactgagaagaagttgaatacttttctaattatttttgtcaaaga 177
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttaaaaaaaaacactgagaagaagttgaatacttttctaattatttttgtcaaaga 380
Query: 178 ttaattagcatatatttctagtacagtttgcctaattgtaaatcaacatgtatatatttt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaattagcatatatttctagtacagtttgcctaattgtaaatcaacatgtatatatttt 440
Query: 238 attagaaactatttctgaccacagagttttgcaatattcaagtactgacttcatactgct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attagaaactatttctgaccacagagttttgcaatattcaagtactgacttcatactgct 500
Query: 298 tacttgtatacaggtttgtaaattattcctttacaatataaatatctcttatttctaatt 357
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacttgtatacaggtttataagttattcctttacaatataaatatctcttatttctaatt 560
Query: 358 aaatacttcttttccagaaagtatttatttgtaaagacaatcaaggttcagtgaaactat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatacttcttttccagaaagtatttatttgtaaagacaatcaaggttcagtgaaactat 620
Query: 418 ttcaggctcttaagaaaaatgattagcatgtagatagcagtcacaagttcattaatatgt 477
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaggctcttaagaaaa-tgattagcatgtagatagcagtcacaagttcattaatatgt 679
Query: 478 gttcggagacactaatatcctagattttttttaaagtgccattgagggcaatgttggcaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gttcggagacactaatatcctagattttttttaaagtgccattgagggcaatgttggcaa 739
Query: 538 ctgtggtcctgctgcagctggggtcatgttggtttccttgacctgtgttaccagcaaaag 597
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctgtggtcctgctgtagctggggtcatgttggtttccttgacctgtgttaccagcaaaag 799
Query: 598 tcatatggatggatgtcagtggtctatgctgctgtctgaaga-atgttgata 648
||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 800 tcatatggatggatgtcagtggtctatgctgctctctgaagacatgttgata 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1062
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1052
Effective search space: 683800
Effective search space used: 683800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
