BAC Information

Click to search

BAC

Clone NameMSMg01-159O05
Chromosome9 (Build37)
Map Location 16,939,979 - 17,059,047
singlet/doubletdoublet
Overlap genenone
Upstream geneFat3, EG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159O05.T7 (MSMg01no159_o05.b1)MSMg01-159O05.TJ (MSMg01no159_o05.g1)
ACCAG359705AG359706
length718718
length of high quality
(start - end)
316 (49 - 364)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no159_o05.b1 PHD_FILE: MSMg01no159_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:42 2005CHROMAT_FILE: MSMg01no159_o05.g1 PHD_FILE: MSMg01no159_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,939,979 - 16,940,290)(17,058,762 - 17,059,047)
sequence
ATCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCAAAATCTGACTTCCATTATGCTCATTTAGTAAGTACCAT
TAAATCCAAAATGGTGTCTTCTGGGCCCCTATTGGATGTTCTCCAGAGAC
TGTCAACATCTGGCTCTCAGCCATCTCCACCAGGTGATTTATGCTGTTTA
AAGACAACAGAGTTACAGGAACAAGACGTGAGAAGTATCCAGAGCTCTAT
TTTGCACTCAGCACATGATTAGTTATTCACACTAGAAACTTTTTTCACAA
ACTTTCTGCACAGCATTATTACCCCTGTACTAGATGTGGTATGGGTCATA
GCCTTAGAATTCATTAATGCTTACCCCCCCCCCCCTATTAATTTTGCCTT
CTTATATTTTAACTTTTAACACACACACAATATATTCTATTCACAGTTTC
TCCTATCATCAACTGCTTTCAGATCCTCCCAAGTTCCCCACTCCACTAAA
CTCTGACTTTTCTATCCCTCTGTGTCTTGAAACAAACAAGCAGATCATGA
AACAAAAACAAAATCCCCATAAAGACAGAAAGCCAGAAACAAATATATAT
ATATATATTCAAAGATGTATAAGATGAATTGTAAAACAAAACAATACTAT
TGAAATTTGTGCAAATATGCTCTGATTGTAGGTTGTGTAGCAATGTTACA
CACTTGTGTTTCTGTTGC
ATACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTGATTCTATTTCTCAGGC
TATTTGAGTATGGACTAAGCCCATCTATATTTGCAGTTGGTAGTAACTGA
TGTGTGTGAGCCTTTTTGTTTACCTGTATTTTTACCATAAATAATACAAA
CTTGTTTTTGTTGTTCCTCCACACATTTTTTTCTCGAATCATAGAATAAT
TTTTATCACTCATTAAAGGACACATGAAAAGTTTGGATCATTTAACCATT
CGTTTCTGTTATTGTGTTTGTTTGTATACTTGTTTGCTTTGATTTTATGA
GACAGGGTTCTTATGTTTATCACCCCCCCCCCGCAACTCAATTTGTAGAC
CAGGTTGGCCTCAAATGCACCGGAATCCACCTGACTCTGCCTCTCAAGTG
CTAAAATTAAAGGCAATTTCTACCATGAATAACTTTTTAAAATCACCTAA
AACTATCATAAACAAAATATATGTAAATAACATAAATCAGCATGACTCTG
TCGGTCAACTATAATCACTATGCAATATGCCTTTTATTTTCTTGAGATAA
CAGAATTCTAAGAAATGCCATTCTATTTTGTATGTGAAATGTATCAATTC
TCAGAACAAGATATTTTACATGCAACTCCGTAAAACCCTGCTGTTAAGGA
GTCAGTCTCCAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_o05.b1 MSMg01no159_o05.b1 CHROMAT_FILE:
MSMg01no159_o05.b1 PHD_FILE: MSMg01no159_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:42 2005
         (316 letters)



>mm_chr9_16939775_16940490
          Length = 716

 Score =  526 bits (272), Expect = e-154
 Identities = 302/312 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcaaaatctgacttccattatgctcatttagtaagtaccattaaatccaaaat 64
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcctcaaaatctgccttccattatgctcattcagtaagtaccattaaatccaaaat 264

                                                                       
Query: 65  ggtgtcttctgggcccctattggatgttctccagagactgtcaacatctggctctcagcc 124
           ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgtcttcagggtgcctattggatgttctccagagactgtcaacatctggctctcagcc 324

                                                                       
Query: 125 atctccaccaggtgatttatgctgtttaaagacaacagagttacaggaacaagacgtgag 184
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 atctccaccaggtgctttatgctgtttaaagacaacggagttacaggaacaagacgtgag 384

                                                                       
Query: 185 aagtatccagagctctattttgcactcagcacatgattagttattcacactagaaacttt 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtatccagggctctattttgcactcagcacatgattagttattcacactagaaacttt 444

                                                                       
Query: 245 tttcacaaactttctgcacagcattattacccctgtactagatgtggtatgggtcatagc 304
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 445 tttcacaaactttctgcacagcattattacccctgtacaagatgtggtatgggtcatacc 504

                       
Query: 305 cttagaattcat 316
           ||||||||||||
Sbjct: 505 cttagaattcat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_o05.g1 MSMg01no159_o05.g1 CHROMAT_FILE:
MSMg01no159_o05.g1 PHD_FILE: MSMg01no159_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:42 2005
         (286 letters)



>mm_chr9_17058562_17059247
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctgattctatttctcaggctatttgagtatggactaagcccatctatatttgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctctctgattctatttctcaggctatttgagtatggactaagcccatctatatttgcagt 427

                                                                       
Query: 61  tggtagtaactgatgtgtgtgagcctttttgtttacctgtatttttaccataaataatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tggtagtaactgatgtgtgtgagcctttttgtttacctgtatttttaccataaataatac 367

                                                                       
Query: 121 aaacttgtttttgttgttcctccacacatttttttctcgaatcatagaataatttttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaacttgtttttgttgttcctccacacatttttttctcgaatcatagaataatttttatc 307

                                                                       
Query: 181 actcattaaaggacacatgaaaagtttggatcatttaaccattcgtttctgttattgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 actcattaaaggacacatgaaaagtttggatcatttaaccattcgtttctgttattgtgt 247

                                                         
Query: 241 ttgtttgtatacttgtttgctttgattttatgagacagggttctta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttgtttgtatacttgtttgctttgattttatgagacagggttctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)