BAC Information

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BAC

Clone NameMSMg01-160A21
Chromosome9 (Build37)
Map Location 45,055,993 - 45,206,100
singlet/doubletdoublet
Overlap geneIl10ra, Tmprss13, Fxyd6
Upstream genePdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4
Downstream geneFxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160A21.T7 (MSMg01no160_a21.b1)MSMg01-160A21.TJ (MSMg01no160_a21.g1)
ACCAG359826AG359827
length735738
length of high quality
(start - end)		330 (379 - 708)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no160_a21.b1 PHD_FILE: MSMg01no160_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:54 2005CHROMAT_FILE: MSMg01no160_a21.g1 PHD_FILE: MSMg01no160_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,205,791 - 45,206,100)(45,055,993 - 45,056,275)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGCTAGCCCTCCATCCTTACGAAGGCGGAGCCCTGACTCCC
AGGGTGAGGCGGGAGCAGAGACCCTTGACCTTGGGGTATGCGTCAGCCTG
GCACCCCCTTCCCACTTCTGCTACCATTCAGTTTTGTCCTCTGCCTCGGC
TCCTCTTCCAAGAATAGCATGGCCAGGGATCTACAACCCGTAAAGGGAAA
AAAAAAATGAACAAACAGAACACCTGAGAGGCTCACAGCGTTTGGGGACG
CAGAGACAGCAGCGGCTTTAAAAGAGGTTGGAACATCTTTGGGGGTCAAA
CTCATGTGATTATATAAAGCCCCGCCCCCCAAACATGAAGAACCCTCAAG
GTCACCGAGAACAAGCCACTCATTGTCACTTTATAGTACAGTAGCTTCCC
CATCCAATCAAGTAAAGTTACCACATTAAACCAAGTCACGGGGACTGGGG
CTGTCCCTCAGCCAGCAAAGAGCTCACACAACAGGCACAAGCACCAGCAC
CCCTAAAACCAGCTGTGCTTGTGCACATCTGTAACCCCAACTCAGGAGAT
GGATGGAGTAGGGATGTCCAGAAGTTAAAGTCATCCTTGGCTGTGTGTGT
TTGTTTGTTTGTTTGTTTTGAGTTTGAGGCCAGCCTGGGCTATTTAAGAC
CCCGTCTCAAAGGAAAAACAAAAACTAAACAAATC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACATTTTGGGGACCAGAAGTGA
AAATGTTCTGTCTGCTCAGAGGAACAGCAAACCAACAAAACAATGTGGGA
GTGCAGTGCTGGAGACCAAAGCCTTGGTGGTCCCTGCCCTTCTCACTCAC
CCATTCACCCCATCCACCCTGCTTCTGCGGAACCATGGGCTTGGCTTCCA
TTCCCTAAAGCCTTGGATAGGTCTTCCCGTGCATAAGCAGAGGGCTGCTG
GGAGAAAGGTGGGTGGAAATGGAAGAAGTCCCTCCTCTTCTATTTTAAGC
CTGACTCTTCTCCTTTTTGACCACGCCCCCGAGGCTCCCTGGGCCCCAGG
GACCTTGTTTGTGTAACCCCGCCATAAAAACAAGAGAACTTTGAGGCTTC
CAGCTATGAAGATATTTCACAGTGGGTAACTTCAGTTCCACCATGCAGGG
GTGAGAGTGTCAGAGAGGTGAATGGACAGTCTGTGTGTGTCTGTGTGTCT
GTGTGTCTGTATGCGTGTGTATGTGTCTGTGTCTCCGCATCTGTGTGTGA
TGTGTGTACTCATCGTAGTGTGTCCATCATGCAAAATTGAACCCACCGTT
AATAATCTGTCCTAGATGCCTTGACCCAGCAGCCTCTATGTTGTGANTAC
CCTAACCATTTTTAAATTAAGATTTTTTCCCTACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_a21.b1 MSMg01no160_a21.b1 CHROMAT_FILE:
MSMg01no160_a21.b1 PHD_FILE: MSMg01no160_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:54 2005
         (330 letters)



>mm_chr9_45205791_45206520
          Length = 730

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   caaacatgaagaaccctcaaggtcaccgagaacaagccactcattgtcactttatagtac 61
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 310 caaacatgaagaaccctcaaggtcaccgagaacaagccactcattgtccctttatagtac 251

                                                                       
Query: 62  agtagcttccccatccaatcaagtaaagttaccacattaaaccaagtcacggggactggg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 250 agtagcttccccatccaatcaagtaaagttaccacattaaaccaagtcatggggactggg 191

                                                                       
Query: 122 gctgtccctcagccagcaaagagctcacacaacaggcacaagcaccagcacccctaaaac 181
           ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 190 gctgtccctcagccagcaaagagctcacataacaggcacaagcacctgcacccctaaaac 131

                                                                       
Query: 182 cagctgtgcttgtgcacatctgtaaccccaactcaggagatggatggagtagggatgtcc 241
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cagctgtgcttgtacacatctgtaaccccaactcaggagatggatggagtagggatgtcc 71

                                                                       
Query: 242 agaagttaaagtcatccttggctgtgtgtgtttgtttgtttgtttgttttgagtttgagg 301
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 70  agaagttaaggtcatccttggctgtgtgtgtttgtttgtttatttgttttgagtttgagg 11

                     
Query: 302 ccagcctggg 311
           ||||||||||
Sbjct: 10  ccagcctggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no160_a21.g1 MSMg01no160_a21.g1 CHROMAT_FILE:
MSMg01no160_a21.g1 PHD_FILE: MSMg01no160_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:54 2005
         (283 letters)



>mm_chr9_45055793_45056475
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacattttggggaccagaagtgaaaatgttctgtctgctcagaggaacagcaaaccaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacattttggggaccagaagtgaaaatgttctgtctgctcagaggaacagcaaaccaac 260

                                                                       
Query: 61  aaaacaatgtgggagtgcagtgctggagaccaaagccttggtggtccctgcccttctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaatgtgggagtgcagtgctggagaccaaagccttggtggtccctgcccttctcac 320

                                                                       
Query: 121 tcacccattcaccccatccaccctgcttctgcggaaccatgggcttggcttccattccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacccattcaccccatccaccctgcttctgcggaaccatgggcttggcttccattccct 380

                                                                       
Query: 181 aaagccttggataggtcttcccgtgcataagcagagggctgctgggagaaaggtgggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagccttggataggtcttcccgtgcataagcagagggctgctgggagaaaggtgggtgg 440

                                                      
Query: 241 aaatggaagaagtccctcctcttctattttaagcctgactctt 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatggaagaagtccctcctcttctattttaagcctgactctt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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