BAC Information

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BAC

Clone NameMSMg01-160E16
Chromosome9 (Build37)
Map Location 71,915,586 - 71,915,699
singlet/doubletsinglet
Overlap geneTcf12
Upstream geneLOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, EG666001
Downstream geneLOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160E16.T7 (MSMg01no160_e16.b1)MSMg01-160E16.TJ (MSMg01no160_e16.g1)
ACCAG360003AG360004
length713755
length of high quality
(start - end)
314 (36 - 349)114 (90 - 203)
definitionCHROMAT_FILE: MSMg01no160_e16.b1 PHD_FILE: MSMg01no160_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:12 2005CHROMAT_FILE: MSMg01no160_e16.g1 PHD_FILE: MSMg01no160_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGA
CAGCCAGGGATACAGAGAAAAACTCTGTCTCAAAAAACAAAACAAAACAA
AACAAAACAAAACAAAACAAAACAAAAAACAAAAAAACAACAAAAAAAAA
AAAACCCGGAAACTAAAAAACTATGGTTTCACATGGCTGCTTAAAACAAG
ACCTGAAAAATAACATTAATAGACAGATTAACACTGAAGGGAAAAAAACC
TCGAAGGCCTTTACTCTATTCCAAGAACTGAAAGTGGAAGAAACGGTCTC
CTATGGGAGAGCTCCTCAATCAGCTATCAAATACTAAAGGGTCAGCATTG
ATANTATACCTCCCACCCCAATATTGAGGATGGAGGGATGGCTCAGGGTA
AGACCACACACAGAAACATCAAGAGGTCCTGAGTTCAATTCTCAGCAACC
ACATTGTAGCTCACAACCATCTGTAATGGGATCTGATGCCTTCTTGTGGT
GTGTCTGAAAACAGCTACAGTGTCCTCACATAAACTAAATAAACTTTTTT
AAAAAATTATTATTTTAAAAAAATAAAGGTAAGATTGTATGGACTGACCA
TGTTATAGTTATATGTTTAGAAATATACCTATAAAACAATTAATGAATAT
CATGAACTTGATAGCAACGTGTCAGTCATGGTATAAACCGAACGCACAAA
CATACCTTATTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGGAGCTGGTCTCCAGTTTC
ATGTTTTATTCACTCTGTTGGCTGTTCACTCATGTCACTGTCCTTTCACA
TTTATGCTTTCTTTTTTCTTTGTTTTATTTTGAGACAGGGTTTCTCTGTG
TAGACTAGGCTGGACTCCGAGCCAAAGATCTGCTTCCTTCATTTTTTTAT
TAGGGGGGGGATTAAAGGCATGTATTACCCCTGGCTACATTTATAATTTT
CTTGAAAACATATATTTTTAAAAAGATTTATTTATTTGTTTTATGTATGT
GAATACATTTTTTTTGCCCCCCCCCCCATCATAAAAAGGCATCAAATCTA
ATTACCGATGCCCCCCCCACCATGAAAAAGCTCGCTACTTAACTTCAGCT
CTTTTTGTACCATCAGCAGCTGTCTCCTTAACTCTCCCATTCTCTTACTC
CAATAAAAAAAAATAATATATTTAATGAGCATTTTCTATTTTATTCCATT
TCCCCATTTTTTTTTATAAAACAACCCAAATATTTTTTTCCTAACTAATA
TCTCTCTACCCCAATTCCTCCTTCTTTTCTCTTTCCCCCCCCCCCTATAC
CTATCTTTTTCTCTTGCTTTTACCTTTATACCTCTCTATTCCCCTTCCAC
TCTTTTCTTTTCTTTTCTCCTGGTTTTTTATCTTTGTCTGAAACCAAAAT
AACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_e16.g1 MSMg01no160_e16.g1 CHROMAT_FILE:
MSMg01no160_e16.g1 PHD_FILE: MSMg01no160_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:12 2005
         (114 letters)



>mm_chr9_71915386_71915899
          Length = 514

 Score =  221 bits (114), Expect = 1e-62
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccagtttcatgttttattcactctgttggctgttcactcatgtcactgtcctttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tctccagtttcatgttttattcactctgttggctgttcactcatgtcactgtcctttcac 255

                                                                 
Query: 61  atttatgctttcttttttctttgttttattttgagacagggtttctctgtgtag 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atttatgctttcttttttctttgttttattttgagacagggtttctctgtgtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)