BAC Information

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BAC

Clone NameMSMg01-160F12
Chromosome9 (Build37)
Map Location 87,739,600 - 87,740,009
singlet/doubletsinglet
Overlap genenone
Upstream geneSnap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
Downstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160F12.T7 (MSMg01no160_f12.b1)MSMg01-160F12.TJ (MSMg01no160_f12.g1)
ACCAG360042AG360043
length742756
length of high quality
(start - end)
310 (50 - 359)410 (127 - 536)
definitionCHROMAT_FILE: MSMg01no160_f12.b1 PHD_FILE: MSMg01no160_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:16 2005CHROMAT_FILE: MSMg01no160_f12.g1 PHD_FILE: MSMg01no160_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGCAGATTTTTTTTTGGCATTTAACATTTCTAACTTCCT
TATATATTCTGAATGTTAATTCACTATGAGAAGAAACCCTGAGAAACACT
GTCTCTCATTCTGAAGACACTTGATTGTTTTCTTTGGCTGTGCCAAATCT
TTTTAATTTAATGTTGGTCAACTCTTACCATTCCTGAGTTATGTAGGGGA
TTTTTTTGCGGGAGGTCATTGCCTATGCCTGTATCTTGAGACGCTTCCAT
ATGGTTTGCTCTGGTATTTTTAAAGCTTTGTCTCTTTTATTAAGATCTTT
TATCCATTTTTTGTTTTCCCCCCCCCCCCCGCCATGAGAGTAATCGACTT
TCATTCTTCTGCATGTGGACACAAAAAAAAAACAGGCACCACTTGATAAT
GGGTATATCTTTTCTCCAGCATATACTTTGGGCACCACCTCTGTCAAGAA
TCTGGTGGCTAGGATTTATCTGTGGTTACTAATACTTCAGTGGACTCTGG
CCCTATCTTTGTGCCAGTACTATACTGCTTTCATAACTAACAATGTTAAG
GCGTATATCCACGGGATATATTACAATATTGCTTCCTTCAGTTCTCGACT
TGCTCTCTCTATTTCAACCCTTGTTTTCACTTCCATTTTTAATGTCTTAT
ATTACTCCGTACTCTTCTTCTATTTTAAATTCTCTGCCCTTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGATCAACAAGAGAGCAGAGGAACAAAAA
CAGAATGTAAGGGTATTAAGCCCGATCGTTGTCTCGGTAAATGAGGAGAC
TGCTATTGAAATGGATGGTCCAGAAGAAATGCAAAGGAGGCTGAGAATTC
CTGTATTAATTTAATAGCCTAGATAACAACCCAGGTGCAATATGTTTAGA
AGAAAATGCTTTCCTGTAATCATCAAAATATAATACAGAATAAAAATAAT
AATCAGATAGCTCAAATTATGTAGCAAATAAAGTACTACTCACAGTATTC
TTCATTTTATCTTTATTTTCCATTGCCTTGTAATATCTTTACCATTCTTG
AGATAATGGTAACAGGAGCAGACCTGCTGGGAATTCCACTGTGTTAAGAG
AGCTTTCTTAAATTTCTCTGGAATTAAACGATATTGAAGAAATGCCTCCA
ATGAGAAACCAGTATTTATTCCCATACAGTGATAATATATCTCTAAGTTT
TTTTTCTTTCTTTTCTATCTCCTTAACATTGACAACTTGACTGATGAACT
TGGTAGCTCGAGAAATCTCCCAGGCAATGATATTCTTGTGTTATTTTGTC
CCCTGTGTTCTCATGTTAAGTTAAATCTTCTTGCACCCTTTTATATCATG
AGTCTTTACTTGTAATGTTAATATTTTCCCCCAATAATATTCTTGTTATC
CTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_f12.g1 MSMg01no160_f12.g1 CHROMAT_FILE:
MSMg01no160_f12.g1 PHD_FILE: MSMg01no160_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:16 2005
         (410 letters)



>mm_chr9_87739400_87740209
          Length = 810

 Score =  731 bits (378), Expect = 0.0
 Identities = 402/410 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgttgtctcggtaaatgaggagactgctattgaaatggatggtccagaagaaatgcaaag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 610 cgttgtctcggtaaatgaggagactgctattgaactggatggtccagaagaaatgcaaag 551

                                                                       
Query: 61  gaggctgagaattcctgtattaatttaatagcctagataacaacccaggtgcaatatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaggctgagaattcctgtattaatttaatagcctagataacaacccaggtgcaatatgtt 491

                                                                       
Query: 121 tagaagaaaatgctttcctgtaatcatcaaaatataatacagaataaaaataataatcag 180
           |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 490 tagaaggaaatcctttcctgtaatcatcaaaatataatacagaataagaataataatcag 431

                                                                       
Query: 181 atagctcaaattatgtagcaaataaagtactactcacagtattcttcattttatctttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 atagctcaaattatgtagcaaataaagtactactcacagtattcttcattttatccttat 371

                                                                       
Query: 241 tttccattgccttgtaatatctttaccattcttgagataatggtaacaggagcagacctg 300
           |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 370 tttccattgggttgtaatatctttaccattcttgaaataatggtaacaggagcagacctg 311

                                                                       
Query: 301 ctgggaattccactgtgttaagagagctttcttaaatttctctggaattaaacgatattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctgggaattccactgtgttaagagagctttcttaaatttctctggaattaaacgatattg 251

                                                             
Query: 361 aagaaatgcctccaatgagaaaccagtatttattcccatacagtgataat 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagaaatgcctccaatgagaaaccagtatttattcccatacagtgataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)