BAC Information

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BAC

Clone NameMSMg01-160K14
Chromosome9 (Build37)
Map Location 62,766,889 - 62,767,002
singlet/doubletsinglet
Overlap genePias1
Upstream geneKif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4
Downstream geneLOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160K14.T7 (MSMg01no160_k14.b1)MSMg01-160K14.TJ (MSMg01no160_k14.g1)
ACCAG360273
length677736
length of high quality
(start - end)
114 (404 - 517)---
definitionCHROMAT_FILE: MSMg01no160_k14.b1 PHD_FILE: MSMg01no160_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:41 2005CHROMAT_FILE: MSMg01no160_k14.g1 PHD_FILE: MSMg01no160_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAATAGATTAAGCCTAG
GAAGAAAACTAAGATTAGACCCAAAGATCAAGGAACACCGGTACAAATTT
AGAATGTAAGTAGTTATGAACACCAAATATGCCTACTCTTCTCAAAAACA
AAAGGGGTACTACATGCTAACATTTACTTAATGCTGAAGAATTTTTAAAA
GATAACAGTGCTTGCATGCCAATAGACACTATAAATCAGAGAACACATTT
GTACATCTTTGGGGAAAGCCATCTGTCAATGCACACAAAATTTCTCATAA
TCCTTCTTGCTCTTTGGCTCAAAAACTCTACTTCTGTTTTTTTACCGCAC
GCACCTCATCATTCATCTATGCAAAGCTACAGCTGGCACGACCCCATTCA
AAACTATACTCAACATCCGAGAACAGGCTAAATAGTGGTATATTCTTATC
ACCATATGATATAATCATTTAAAAAGCTACCAAAGAATATATAATGACAT
AGGAAGAAGTTTATGATACTACGAGGATCAATAGGAATAGCATAAAGATT
CACCATGGGACAAAAATCCTTTTCAACTCATTTACAGAATAAGTCACATA
TAAACCCAGTTAAGCCATAGTGATTAACCCTTCTTTATGACAGGAAAATA
GCTACCAACAAAAGCTTACTTACTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGCCTCTCTGGCCTTTGTCTAA
CACAGGCTACTCACCCCGCGACTCTCTCCAAAAAACCTGTTCTGCGCTCT
GCTCATTAGCTCTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACGACTTCTAAACACTTTTGGGA
TACATCCTCAGTAATATTGTGCCCTGTAACACCCTAATGGCTATTTACTT
CCATCATTCATTTACCCCCCGCTTATATACCTCTTATATCCCTGTATAAC
CCCACATTACAATCTCTCCCCTCCTAACTATAACATTACTCTTTTTCCCA
TATATAATTCTTATCTAATTACTACTAAAACGCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_k14.b1 MSMg01no160_k14.b1 CHROMAT_FILE:
MSMg01no160_k14.b1 PHD_FILE: MSMg01no160_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:41 2005
         (114 letters)



>mm_chr9_62766689_62767202
          Length = 514

 Score =  213 bits (110), Expect = 3e-60
 Identities = 113/114 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatactcaacatccgagaacaggctaaatagtggtatattcttatcaccatatgatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatactcaacatccgagaacaggctaaatagtggtatattcttatcaccatatgatata 260

                                                                 
Query: 61  atcatttaaaaagctaccaaagaatatataatgacataggaagaagtttatgat 114
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatttaaaaagctacaaaagaatatataatgacataggaagaagtttatgat 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)