BAC Information

Click to search

BAC

Clone NameMSMg01-160L17
Chromosome9 (Build37)
Map Location 54,450,503 - 54,450,785
singlet/doubletsinglet
Overlap geneIdh3a
Upstream geneCul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2
Downstream geneAcsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160L17.T7 (MSMg01no160_l17.b1)MSMg01-160L17.TJ (MSMg01no160_l17.g1)
ACCAG360321AG360322
length878726
length of high quality
(start - end)
---283 (71 - 353)
definitionCHROMAT_FILE: MSMg01no160_l17.b1 PHD_FILE: MSMg01no160_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:46 2005CHROMAT_FILE: MSMg01no160_l17.g1 PHD_FILE: MSMg01no160_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATTCGCGGGCGCTGATACGACTGTTTTTAGTGGGGAGGATCCGGGTCA
TTCCAGCAGCTATCTAGCGCGACTATCTAGGTGTTGTGGGCGTCTGGCCT
CAACTGCAGAAATCGTGGCCTCTATGCCTGGGGTGGTGTGGTGTTTATCC
AAACACTGCGGGGTTTCGAGTATGGATTGTGCTGGAGCGCACACGGGCGC
TCCCCGCCCCGCTCCCCCCCTCCCCCACCACGCCCCTCCGCTTCCCACTT
CCGCCACGCTCGTTCCTCCCCGCCCCTTCGTCTATCCCCCTCACCCCAAA
CCCCGGGGCCCCTCACCCGTACACCGCCCCCCGTCTACGGGCCCCCGATC
CTTTTTTTATCCCGGGACATATCCCGGGCCGACGCCACCAGGGGGGATTT
TTGTTANTTTTCTCCCCCCCCCCCCACCCCAGGTTTTGGTCCTCCCCCCG
GGCACACCTCGTGGGTGGGGCGCCCCCCTTAAAAAAAAAAACAAACCCAC
TTTCTTGGCGGGGTGTTGTTGTTTCTTCTGGTTTATGGAATTCCGCCCCC
CCGGGGCCCACCGGGGGCACCCCACGCCACCACCCACCCGGGCCCACCCA
CGCCCCACCCTCCCGCGGGGTCCCCACCACCAGGGTCCCCCCACCCCACC
GGGCCCCCCCTCCGGCGCCACACCCCACACCCTCCTGGGGCCCTCAACCC
CGGGACACCACCGGGGCTCCTCCGCCCCCCCGCGCCCCCCCACGTGTGCC
ACCCCAGGGGGCACCACCCGGGGGGGCCGCCCCACCCACCCGGACACACC
CCGCGGGATTCCACACACCAACCCCCCACCCCGGGTTGNGGTGTTTTATA
ATATATTATTTGCGTGTCCCCTTTTTTG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGCCATCCAGAGCTAGACAGCAAGACCT
TGCCTGTCTTAAAACAAGGCAGTAAAGAAACCACTGAAATGGCCACTCCC
TTAAGGGAAGGCTCTTATTGTAAATAAGAAAGAGACGTTTCCAGAGGCAC
CTGGAAGAGTCCAGAGCAGAGGAAAAAAGGAAACATTGTGGTCATGGCCA
GGGCTATCTTTGAGAGAAGAGAAGTAAGAGAGAACAGTAGAAATAGTAAG
AGATGGGGGCAGGAAGAGTGAGTAGTGCAATAAGGGTGGCAGGCAGAGGC
AGGGATTCATGGTTTCGCGAATCCGGCACCAAGGAGGCCAGGAAGTGAAG
AGCCAGGATGCTCCCCCACGAAATAAAGATGCAGAACGGGCGCTAGTGAG
TGGTCTGAGGGACTCTGAGATGTAACTACAGGAGTGAGTCAGTGGGGAGC
CACGCCCTTTGCAAGCGCCTGAGGAATGAATGCTGGCTTTTATCTAACCA
CCTAAAATCCTTCCTTGTATTCATTGCTGCCTGGATATACTGACCTAAGA
CACTCCTCTCAAGAATAAGACCCCTTTAAGAGTAGGATGTTATTTCTATC
CCTCCCCTTTGCTTCACCTATTTGACCCGACAAAACCGACTGGTCTTCGC
TCCTTACTGCTTTGTCTATTTCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_l17.g1 MSMg01no160_l17.g1 CHROMAT_FILE:
MSMg01no160_l17.g1 PHD_FILE: MSMg01no160_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:46 2005
         (283 letters)



>mm_chr9_54450303_54450985
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccatccagagctagacagcaagaccttgcctgtcttaaaacaaggcagtaaagaaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 483 caggccatccagagctagacagcaagatcttgcctgtcttaaaacaaggcagtaaagaaa 424

                                                                       
Query: 61  ccactgaaatggccactcccttaagggaaggctcttattgtaaataagaaagagacgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccactgaaatggccactcccttaagggaaggctcttattgtaaataagaaagagacgttt 364

                                                                       
Query: 121 ccagaggcacctggaagagtccagagcagaggaaaaaaggaaacattgtggtcatggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccagaggcacctggaagagtccagagcagaggaaaaaaggaaacattgtggtcatggcca 304

                                                                       
Query: 181 gggctatctttgagagaagagaagtaagagagaacagtagaaatagtaagagatgggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gggctatctttgagagaagagaagtaagagagaacagtagaaatagtaagagatgggggc 244

                                                      
Query: 241 aggaagagtgagtagtgcaataagggtggcaggcagaggcagg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aggaagagtgagtagtgcaataagggtggcaggcagaggcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)