BAC Information

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BAC

Clone NameMSMg01-160N21
Chromosome9 (Build37)
Map Location 75,279,098 - 75,279,408
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6
Downstream geneLeo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160N21.T7 (MSMg01no160_n21.b1)MSMg01-160N21.TJ (MSMg01no160_n21.g1)
ACCAG360422AG360423
length713708
length of high quality
(start - end)
316 (48 - 363)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no160_n21.b1 PHD_FILE: MSMg01no160_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:56 2005CHROMAT_FILE: MSMg01no160_n21.g1 PHD_FILE: MSMg01no160_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCGGAAATGTGACCACTCACAGTATGTAGGCTGAAAGCTCAG
TCTCCCTGGTGGAAAACGACTGCAGCAGAGCCGCCTGCCTTCCAGCAGAG
CTCAGGAGAACCTGGTCCTTGTGTTGGGCTCCTGATAAGGTCAGCAATGT
CTGGCTCCTGGCCACATCAGTAGCATAGCTCTGTCTGCGGTCTCGTTGCC
TTTGCCTCGTCAGTGTATCAAACCTCCCTCTGCCTCCGTCTCCTAAGGGT
ATATGCCACCGTATCCACGGCCCACCTCAAAACTCTTAGCCACTTCTGCA
GCGGCTTTTCTCTTNAGTAGGTCACANNACCGATNCCGAGGGTAAGAACC
TTGGCATGGAGCCTTTCTCCCCACCCACAAAAAAAAAATGGCTTGCTCTC
CAGCCCCCTCTCTCTCTTCTATGTAAAGATTAAAATTCCTAAAACAGCTG
ATTCTAATAACTTCATAGCTAGGTCAGTTGGGACAAACAGACGTTTAAAG
CACTGTGATTGGGCATGAGGAATATACCAGAAGACTATATTCTCAGCTGT
GGAACCCAGCACAATCAGTATCAGATGGCACTGAGAGACGTCACACACTT
CAAGTCGAACTTGTTGAAGTCTCGTTCTGCACATCCTTGGTAACCCCATC
ACCCCCGGAGTGG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTTCCACGTACTTTGGGGCACCTGG
CTTTTGCCGAAATACATTCTAAAATTCTTAAAACATGGACTGGAAAGATG
GCTCCATAGTTAAGAGTGCTTGCTGAGCAACCAGAATCAATTCCCAGCAC
TTATGTAAGCTGGGTGTCCAAAGATACCTGTATCTCTAACTCAGAGGGGT
GTGGCGCCCTCTTCTGGCCTCTGTGTGCAAAGGTGCAAGCATCGGGGTTC
ACTTCTGCATACACTTACACAGACACCTGCTTTCACACATAGAGACATGT
AGACTCTTTTTGACAGACCCCACCCCCGGCAGACAGACAGACAGACGATG
GATGATTTTTACCCCCCTTGGAAGGAAAGACCCCTGGATATAGAAATGGT
CCTTATCTGAAGCTTGGGGCCAGAAGGGTTTTGGTTTCAGTTTTCCATAT
TTTGGAGACTTGGTGTAGACGTCACTAAGAGAATACCCCTCCTCCTGCAG
TCCCAAATCCTAAATGTTTCAAAGATGGAAACTTTTCATTATCACACTGG
TGGTGTAGTTCTGGATTTTAGCATTTCTGATTTAATTTGGGGGTTTGCAA
CGTTCCACCCCGTTTTTCTTATGTTCTTATCCCCACCTCTCAGGATTTAC
ACTCGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_n21.b1 MSMg01no160_n21.b1 CHROMAT_FILE:
MSMg01no160_n21.b1 PHD_FILE: MSMg01no160_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:56 2005
         (316 letters)



>mm_chr9_75278894_75279609
          Length = 716

 Score =  547 bits (283), Expect = e-160
 Identities = 304/311 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcggaaatgtgaccactcacagtatgtaggctgaaagctcagtctccctggtg 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 515 gaattcagcggaaatgtgaccactcacagtatgtaggctgaaaactcagtctccctggtg 456

                                                                       
Query: 65  gaaaacgactgcagcagagccgcctgccttccagcagagctcaggagaacctggtccttg 124
           ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaaaatgactacagaagagccgcctgccttccagcagagctcaggagaacctggtccttg 396

                                                                       
Query: 125 tgttgggctcctgataaggtcagcaatgtctggctcctggccacatcagtagcatagctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgttgggctcctgataaggtcagcaatgtctggctcctggccacatcagtagcatagctc 336

                                                                       
Query: 185 tgtctgcggtctcgttgcctttgcctcgtcagtgtatcaaacctccctctgcctccgtct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtctgcggtctcgttgcctttgcctcgtcagtgtatcaaacctccctctgcctccgtct 276

                                                                       
Query: 245 cctaagggtatatgccaccgtatccacggcccacctcaaaactcttagccacttctgcag 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cctaagggtatatgccactgtatccacggcccacctcaaaactcttagccacttctgcag 216

                      
Query: 305 cggcttttctc 315
            | ||||||||
Sbjct: 215 tgtcttttctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)