BAC Information

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BAC

Clone NameMSMg01-161A04
Chromosome9 (Build37)
Map Location 30,822,018 - 30,989,706
singlet/doubletdoublet
Overlap geneZbtb44, BC038156, St14, Aplp2
Upstream geneSnx19, LOC666478, Adamts15, Adamts8
Downstream geneEG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161A04.T7 (MSMg01no161_a04.b1)MSMg01-161A04.TJ (MSMg01no161_a04.g1)
ACCAG360526AG360527
length1,2131,212
length of high quality
(start - end)
426 (29 - 454)382 (69 - 450)
definitionCHROMAT_FILE: MSMg01no161_a04.b1 PHD_FILE: MSMg01no161_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:08 2005CHROMAT_FILE: MSMg01no161_a04.g1 PHD_FILE: MSMg01no161_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,822,018 - 30,822,397)(30,989,327 - 30,989,706)
sequence
NNNCCGCATTGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
TCTCCCCTTTCTCCACTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTGAAGTCTCTCCTTGACCATAATTACCATCCTCCTGTCTCAGT
CTCCTAAATATGGACACTGCCGGCACATGCTACCAGGCCTGGGTTAAGAG
TTCTATCTTACAATTCCTACTAACAAATGATATTGGAAATCTGTTACTGT
TCATAGAGCCACAATCAGAGTGGTAAGAAAAAGAAGGAGTTGTCTGAGCC
CAGGGAGAGGTGGAGCCATGGGGGTCGGGCATCCAACAGGGATGTCAGTC
ATAAAGAAGTGTAGCTGCATATGGCAGAAGCAGAGGTGAAAGCAGAGATT
GTGTGGGAGTGCTGAAGACCACACCTTCCTTCTTCTCTCTCTCCCCCTGC
CTTTTTTCTCCCCCCCCAATTTTTGGTATTTTCATGAGCAAGAATACAAA
TCCAGGTCTTTGTTCCTCTTTCTCTTCTTGCCCCTAAGAGCTTCATTTCT
ACTGTCCCTGAAATCGAGGAAGATTAGCATAGATCAATTGTCCAGTCTGC
CATGATGCTAAAGCTTCCTGTCACTAATCGGGCAGAGGGTCATGGGCCTA
GAATTCCGGTACTCAATCCACAGAAGATTGTAAGTTTAAGGTCAGCCTGG
ACAACTTTACATGACTATTGTTTCAAAATAAAAATCTTAACAACAAAAAA
AGAAGCAAGATAGTTTAGCAGTTTAAGAGATGTATTGTTTGTGCAGAGGA
CCTGGACTTGGCTCCCAACACCAACACTGGGTCCCACATAACCATCTGTA
ACTCTAGTTGCAGGGGATCTAAAGTCCTCTTCTGACTTCCACTGGGATAC
CCCCACACACCACCTCTCTCTCTCTTCCCTTTTTTATATTTTTATATCAT
AAATTATAATTGTTAATGTGTATAGCATTTTTTTCTTCTTTTTTTGGAAT
GTATAGAAATATCCTCAAATATTATATATTTATTCGTTTTTTTGTGTACG
TGTATTATTCTCTTTTTTCTTGAAAACCTTGTATATTAACCTCCCTTTCA
ACTCACTTGTAAAACAATACCCCTTATCATATGAATTGTCCCTTCCTACA
TCTTTTTTTTCTAATTGCATCATTCTCTCGTTTTTCCTTCTCTTTTTATA
ATTTAATCTCTAT
NNNAAGACAGTGAGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCTGAGCCAAATTAATGAAATGGGATTTCT
TATTAAGAATGAATTATTAAGTAAGTGGAGGCACTGGCTAGGAAAGCAGT
TGATGCAGCTTGTTTTCAAAGCCTTGAAAGTGCTACCACATGTGTGCATA
GATCACAGGGCCTGCTGAAGTGCCAGTGTGTGGGTGGGGCATTCATTTTC
TTTCGTAGAGCATTCCAGTTCACAGGATATCAGAAGTGCTGACTTGGCAG
TGAAGTCCCATTTGTAACATGGTAGTTTAGGAAGCAGATTGATTTATGTG
TTGAAGTAATGGGTCGAGGCGCTGACGGTGCTTAAGAAAATGGCGAGCAC
ATTAAATAGCAGCATTTCTAAGGAAAGAAGCACAGACATCATACAGCATT
TTTTTTCCCCCCCCCACTGAGGTCGGGTATGTTTGATTAAAAGGATCCTA
CATGTGGCCCACAGAGGCCTTTTATATTTCAGAGGATACTGTCTTGAGAG
TCTCTCATGACCACAAGGATTAATCTTTCTGAACTCAGAAGTGAATCACT
GTATTCTATTAGCTGTCTGGATTGATTCCAGTTACGCTCTTTCTTGGTGG
TAACTGATGTGAGATCTGGCTGTTTCGCTCTCCTTCCTGTTGCTTTAACC
TCTGATACTTTAGACTCTTTAGGGAAGATAGCACTGACCATCTCACTGCA
GAAATCAAATGCACTTACACTGATGTATTGACCTCCGCGGTTGACCCATT
AACTGAGCATTTATCCAGTTGAACCTCTTGTGGTCTTTTAGCCAGCAACC
ATAATGAGTAACATGTGTAACATACTCTTGTTTGAAATATGCCCTAAAAC
CTACCCCTTTCATGTTTTTGTTTTATTGGTTTTTTCATAACTATTTATAC
CTTTTTTATCTTTGTTTATTCTTAATCATTTTAAGTCTCATTCTTTTTTC
CCCCCCCTATTTTCTATTGTAATCTATATAAATTACATATTCCTTACTCT
CCTTTTCTTTATTAATACTTTCTCACTTTTTTGTTATCATTATCTTTCCT
TTCTATTCTTATTACTTTTCTATCATTATTTTTTCCTTTTATCTTATCTT
CTAGTCTTCTTTATAAATTATCTTTATATTATAATNTATTCTCTCTCTAT
CTTTTCTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_a04.b1 MSMg01no161_a04.b1 CHROMAT_FILE:
MSMg01no161_a04.b1 PHD_FILE: MSMg01no161_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:08 2005
         (426 letters)



>mm_chr9_30821775_30822600
          Length = 826

 Score =  681 bits (352), Expect = 0.0
 Identities = 373/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 44  tctctctctctctctctctctctctctctctctctctgaagtctctccttgaccataatt 103
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 tctctctctctctctctctccctctctctctctctctcaagtctctccttgaccataatt 303

                                                                       
Query: 104 accatcctcctgtctcagtctcctaaatatggacactgccggcacatgctaccaggcctg 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 accatcctcctgtctcagtctcctaaatatggacactgccggcacatgctaccaggcctg 363

                                                                       
Query: 164 ggttaagagttctatcttacaattcctactaacaaatgatattggaaatctgttactgtt 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggttaagagttctatcttacaattcctactaacaaatgatattggaaatctgttactgtt 423

                                                                       
Query: 224 catagagccacaatcagagtggtaagaaaaagaaggagttgtctgagcccagggagaggt 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 catagagccacaatcagagtggtaagaaaaagaaggagttgtctgagcccagggagaggt 483

                                                                       
Query: 284 ggagccatgggggtcgggcatccaacagggatgtcagtcataaagaagtgtagctgcata 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggagccatgggggtcgggcatccaacagggatgtcagtcataaagaagtgtagctgcata 543

                                                                       
Query: 344 tggcagaagcagaggtgaaagcagagattgtgtgggagtgctgaagaccacaccttcctt 403
           |||||||||||||| |||| |||||||  ||| |||||||||||||||||||||||||||
Sbjct: 544 tggcagaagcagagctgaatgcagagagagtgggggagtgctgaagaccacaccttcctt 603

                               
Query: 404 cttctctctctccccctgcc 423
           ||||||||||||||||||||
Sbjct: 604 cttctctctctccccctgcc 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no161_a04.g1 MSMg01no161_a04.g1 CHROMAT_FILE:
MSMg01no161_a04.g1 PHD_FILE: MSMg01no161_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:08 2005
         (382 letters)



>mm_chr9_30989127_30989908
          Length = 782

 Score =  735 bits (380), Expect = 0.0
 Identities = 380/380 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgagccaaattaatgaaatgggatttcttattaagaatgaattattaagtaagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tttctgagccaaattaatgaaatgggatttcttattaagaatgaattattaagtaagtgg 521

                                                                       
Query: 61  aggcactggctaggaaagcagttgatgcagcttgttttcaaagccttgaaagtgctacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aggcactggctaggaaagcagttgatgcagcttgttttcaaagccttgaaagtgctacca 461

                                                                       
Query: 121 catgtgtgcatagatcacagggcctgctgaagtgccagtgtgtgggtggggcattcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 catgtgtgcatagatcacagggcctgctgaagtgccagtgtgtgggtggggcattcattt 401

                                                                       
Query: 181 tctttcgtagagcattccagttcacaggatatcagaagtgctgacttggcagtgaagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctttcgtagagcattccagttcacaggatatcagaagtgctgacttggcagtgaagtcc 341

                                                                       
Query: 241 catttgtaacatggtagtttaggaagcagattgatttatgtgttgaagtaatgggtcgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 catttgtaacatggtagtttaggaagcagattgatttatgtgttgaagtaatgggtcgag 281

                                                                       
Query: 301 gcgctgacggtgcttaagaaaatggcgagcacattaaatagcagcatttctaaggaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcgctgacggtgcttaagaaaatggcgagcacattaaatagcagcatttctaaggaaaga 221

                               
Query: 361 agcacagacatcatacagca 380
           ||||||||||||||||||||
Sbjct: 220 agcacagacatcatacagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)