BAC Information

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BAC

Clone NameMSMg01-161A10
Chromosome9 (Build37)
Map Location 80,587,834 - 80,588,240
singlet/doubletsinglet
Overlap genenone
Upstream geneCox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161A10.T7 (MSMg01no161_a10.b1)MSMg01-161A10.TJ (MSMg01no161_a10.g1)
ACCAG360538AG360539
length1,2361,278
length of high quality
(start - end)
416 (32 - 447)383 (70 - 452)
definitionCHROMAT_FILE: MSMg01no161_a10.b1 PHD_FILE: MSMg01no161_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:10 2005CHROMAT_FILE: MSMg01no161_a10.g1 PHD_FILE: MSMg01no161_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCACTGCGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCTA
GAGACCAGGACAGCCGATAAGGTTTAAATAATTGTCCAAACTCAACTGCA
AAATGCTTGTCTCTCTGAAATGAACTTGGCCTCACTGCCATCCCTTCCTT
CAGTTTTACTCTCCTGAGCTGCAAGCATTAACTGGTAAGCCACAGGGAGA
CTCACCCAGACCCTTGGGCTTTGCTCTTAGAATGCTTTGTCCATATAGAG
TGTGCATGCAAAGCTAAAGGAGTTTTTTTTTTCCCCCATGTCAGCTATGA
TGTTGAACAGTTCCTTGATTTTTTTTTAATCTCATGTGTTTTAAAATCTA
CAGGGATATTTGTCCTAGTATTTCCCACAGAAAATCATCATAAGGATTCT
TTGAAAGTAGGCCATTCGATGAATGGTCTTCTCCATTCTTACTGTCTGTT
TTTCCCCCCCCCCCCTTAGATTCTTCTTATGTGAAAGAAAAGATAGAACA
TAAGTATGCAGACTGAGCTTTGAACATTTTCTTATTGTTTTTATTTATTG
GTAAGAACTCTGAATGGTAGCTCCTGAAATACAGGCATTTTCTGCTTTTC
TAAAATGATCGCCTAAGCTGCATGACTCCCAGCAAGGGAAACGTTCATCT
TGTTTTTAATACTGACATCACTACGGGCCCCTAGATGCTAATATGATAAA
AGCCTTCGAAATAAGCATTTTAGATAGGACTTTACTGCTTTAACCAACGT
TTTTCTTTATGACTCCGATTTCTCATTTTGATTAGTGATACAAGAAAACA
CCTAGATGATATTGTCAAGTCTCATCCATCATCANATATGAAGCAAGTAT
TCTGAATACAAATCTCTAAACACTTTCAGCAAATCCCATTTTCTTTAATC
ATGCTGGTGGGGTTGGGGTTTAAAAACATTCAAAGAATTCCTGGTGAACG
ACCCCTCCCGTAAGGGAAAAAGAGAGAAGGTGAACTCCTCCCAAAGGCTT
TTGGGTGAAAGATCCACTTACCCCCCGTCTATTTGTCTGGAGGGGCCCTT
ATAATCACCCCATTTTTGTAACCTTAATTAGCTTTCCTATTTTTGTAAAA
CCCCCACTATGTCTTTTAATATTAGGAGAACATTCACTTCATTTTCTTTC
TGCCATAACACACCAATATCTTACTATATTCTTTTTTCACTGTATTATAG
TGTATTATCCTCTATATCACTTACTAACATTCATTA
NNNGGTACAAGGAGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGACTCTTAAAATCTCTCCACGCCATTTTCT
GCGATATCCCCTGAGATATAAATCAGGAGTTGCAGTATAGATACATACTG
GGCCCCCATGATCTGTTGATTTCTACATTATGTTCTCTCCTGGTTTTCTG
TAACAGTCCCATTTGATGGAAAAAGAAGTTTCCTTGAAGAGAGGTGGCAG
CTACATGAATATCTGAAGATTTGCAGTTAGAAAGAGCAGTTAAAAGACAA
CCTGACGCATTTATCTTTGTGGGTTACTTCATGCAATATAATCTTTCCTA
GGTCTATCTACTACCTGCAAACTTCATGATTTCCCTTCCCTTTACAGCTG
TTTGGTATTCCCAGCCAGTCTGGTTTACAATGAATTTGCCTATGTGGACT
TTTTTTGCCCCCCCCCCATAGCACCGTTAGTATTCAAAGAAAGATTGGTT
AGTTAGTTAAACTTTCCATATTTAAATTGCTCTGAAAATTTGGCTGAATA
TCTAGAACTTTCCATAAGCCAGTGTATCAGCTGTAATAGCTGTTATGCCC
TAGACCTCTATTTGCTGTTACACAGCCCCAGACCATCTCCTGGAACAGCA
AACTGTGGGAAGCCACATGTGCCGTTGCAGAGTGGCACTGACTACTGCTG
GCCACCATGCATAAGTTTGGACAAACAACCAATGTGTACATATGCAGTAA
AGTTTTTTGCCAATATTGCTTTAAAGTGTGATGGGCTCTCTCAATGATGC
CTTGGCCCTGTGTATTATAGGGCAAATCCAGAAATATGCTTCCCTTTGCA
ATTTGTTTGCAAAATTTGCTAATATTTAAAAAAAGTATTATGTCGTACCA
TTTTTTGTTTTTTTATATTATAGTTTTTGTTCCTTTGTTATCCCATCTCT
TTTATCATGTGATAATATGATATAAAATTTCTTTTTCTCCTGCCCTTTGG
AAGTAATGTTTTTTACACCCAAATCTTTTTTCCATTCAAATTTAGGTCCT
CTTTATCAATCTCTCTCTCTATATCAAATTTATTCTTTTTCTCTTTTTTT
TATCCTTATTATGATTCTATCTCTCATCTTTTATTAACCTTTCTCTTTGA
ATTTATAAGTATTTATATCTTCTATAGTATCCTTCATTTATTTATTACTA
TGTATCTAACATTATCTTGACTTATGTANTTGTTTATATCTTTGATNATA
ATTGGTCAGTGACTTCATCTCTATCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_a10.b1 MSMg01no161_a10.b1 CHROMAT_FILE:
MSMg01no161_a10.b1 PHD_FILE: MSMg01no161_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:10 2005
         (416 letters)



>mm_chr9_80587623_80588440
          Length = 818

 Score =  708 bits (366), Expect = 0.0
 Identities = 397/410 (96%), Gaps = 8/410 (1%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattc-tagagaccaggacagccgataaggtttaaataattgtccaaactcaactgcaa 70
           |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcatagagaccaggacagctgagaaggtttaaataattgtccaaactcaactgcaa 271

                                                                       
Query: 71  aatgcttgtctctctgaaatgaacttggcctcactgccatcccttccttcagttttactc 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aatgcttgtctctctgaaatgaacttggcctcactgccatcccttccttcagttttactc 331

                                                                       
Query: 131 tcctgagctgcaagcattaactggtaagccacagggagactcacccagacccttgggctt 190
           | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 332 ttctgagctgcaagcatcaactggtaagccacagggagactcgcccagacccttgggctt 391

                                                                       
Query: 191 tgctcttagaatgctttgtccatatagagtgtgcatgcaaagctaaaggagttttttttt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 392 tgctcttagaatgctttgtccatatagagtgtgcatgcaaagctaaaggagttttttt-- 449

                                                                       
Query: 251 tccccc--atgtcagctatgatgttgaacagttccttgattttttttt--aatctcatgt 306
            |||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 450 -cccccccatgtcagctatgatgttgaacagttccttgatttttttttttaatctcatgt 508

                                                                       
Query: 307 gttttaaaatctacagggatatttgtcctagtatttcccacagaaaatcatcataaggat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gttttaaaatctacagggatatttgtcctagtatttcccacagaaaatcatcataaggat 568

                                                             
Query: 367 tctttgaaagtaggccattcgatgaatggtcttctccattcttactgtct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tctttgaaagtaggccattcgatgaatggtcttctccattcttactgtct 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 818
Length adjustment: 9
Effective length of query: 407
Effective length of database: 809
Effective search space:   329263
Effective search space used:   329263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)