BAC Information

Click to search

BAC

Clone NameMSMg01-161F05
Chromosome9 (Build37)
Map Location 3,857,726 - 3,858,105
singlet/doubletsinglet
Overlap geneGucy1a2
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911
Downstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161F05.T7 (MSMg01no161_f05.b1)MSMg01-161F05.TJ (MSMg01no161_f05.g1)
ACCAG360757AG360758
length1,2511,258
length of high quality
(start - end)
420 (29 - 448)380 (72 - 451)
definitionCHROMAT_FILE: MSMg01no161_f05.b1 PHD_FILE: MSMg01no161_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:48 2005CHROMAT_FILE: MSMg01no161_f05.g1 PHD_FILE: MSMg01no161_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAACACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTCAGAATTTCCCGAACCATTCAGATCTGTCAAAGATGATTATATGCAGT
TTGTTTGTGCTTATTTTGCAAAAACTTGCCTCTGTGGTATATTATTAATA
AACCATGGCCTCTTGGCATACACCTCTATATTACGTTGATATGGCTCTGA
AATCTGGTTGCCCATCATTGACTAACTGGCCCTCATAGCACACCTTATTC
TCAAATCAGACCAAAGCCACAATATATATATTGAATATGCTTCTTCATAT
TGATTAATTTCTACCACCTGCGCTTGCTAGAGGTGAGGCTGCACACTTGC
TGAAATCAGACTGTGAGGCATTGACTGACCTGCTTGAAAAACAAAGCTTT
TTTTCTGAAAAGCAACAGGATAAAAGCTTCTTTGTGGAAGCCCAGGTACT
TTTTTTTCCCCCCCCCCCAGNAANAACCAAGCTCAGGCTCAAAAAAAGCG
GTGTGGTGGAGCTGGCTTTGAGAATTAGCAGAAAGGCCAGATATTCTCTG
GAAGTCAAGGCTGTGCTCCAAATTAACTTTGCTAGGTAATTAAGATTTTT
AGCAATCTTCGATAGGAATCTCTTATATTGGAATTATTACTAGACCAGTC
CAAGATTGAGTTAGAATAACTGGTCACATTGAAGAAAAGAGAAGAATCAT
TACAGCTCTTTCTTATGACTAATCTTTCTAACTCAGATTCCACAGTCTTT
AACGTTCTATGTCCCATAAAATTAAAAAGCTTGAATCAAGGCACCTTAGC
TTGTCCAATCTGGGACAGAGGCAAGCAAAGGTGGGTCAAAACATATACCC
AATTCAGCTTTTCTGTCACCACTGTCAGGGCACTCAGCGAACTCACAGGT
CAACTTGGTCTACGAATCCTTCTGACAGTTGTCTGCTTCTACAAAATTCT
GTTGGAAAGAACCTAAATTTTCTCCTTTTCCCCATAAGGTAATTGTTCTT
GATTCATCCCTATTTCCATTAATAAAATCCTTTTTTTCTCCCGCAAAACT
TAATTATGTCCATTTTTCTAAAACTATAAGGCTTTTTATAAAATTTTTTG
TCATTCCCATTTCTAAATTTTTATAAATAAAAATAGATTTAACTAATGGT
GCGGGGGTATATAATCTCCCCCTTCTTTGTTTTTAGAATAATTAAAATAA
ATACTTTCTCTTACACTTTTAAATTTTTACAACACCCCTCCCATCTACGT
T
NNTTTTAGAAGTGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAATAGAGGACATAGGAGGTGCCTACTGA
AGGTTAGTAGACTGAGCCAGGAACTGTGAAGAATTTTAAAGTAGAGAGAA
AAGTAAAAGCAAAAGTCATAGTATATAAAATAGCCCAGAAATGTGAAATC
TCTTATTAAATTAGAAAACAAGGCACATAGTTCATTAGAAATAGCAGTCT
ATAATTGTGGGAGGAACATCAGATGGACTATGACATCTGTGAGGATTTGG
AATTTTAAAAACTGAATTTATTGCAAAAGTATCTGGATGATTTTTTTTTC
TATCTAAGTAAAGAACTTTGAGGAGAAACATGTGCCAAAGAATGTTGTAT
AATGTTCCTCTGGAGCTGTGGACTGGAGGTCTAAAGGAGAAACAAACTAG
GTTTTTTTTCCCCCCCCCCCAAGAAAAGCAAACCACCTCAAAAAAAAGGA
CCTATGGGTATAGGTGAGGAAATTAATTCTTGGGAAAATTCCCCTAGGAC
ATGATTGATAGGACACTTTGTGCATCATTTCAACAAACATAGCTGACTTT
CTGAAACTTGATTTTACTTTATTTAAAAAAGAAATCTGTTATTTTTTTCT
CCATAAGTGATTATACATTTTTTCCTATTTGTTGAATTCTTTGTAATTCA
CTGAACTCATTGAATCAGGAAAATCATCAGAGTCTCAAGAATATCTGTGG
ATTCCTTCCAAGATCAAGAAATTAATATCATCTGTTGAACTCATGCCATT
GCAGCATGTTCTTATCTTGCAGTTCTGGGAAAATGCCAAAAGCTGGATTA
TGGGTGACAGCCAGTGAGCTTGGCATAGAGACAGAGTAGGGAGCTATCAA
GACTGTTTGGTTTTCACAGAATAGCTCTTGATCTTGGTCTCCTGCCAGGA
TGTGGACCTGATTGTTAATGGCCATATGTTGTTTCCCAATAAAAACTCCC
TTATTTTTTTTGTCTTGAACCATTCTTTGTATAATAAAAAAATTTTGGTT
CTGGACAGCCTAATCAAAATTGTCTCTGGTTTTCTTTACCTCCCGGTTTC
TTTTTTTTTTAACACCNATTTTATTGCCCCTTTTTTCCTTCTGTTTTATC
CCAAGTGTTTTGTGGGTTAATTTCCATACATGATCTCTTTGTGGTTCCTT
CTTCTTTATCTTCTTTTTTTATNTATTTAGCTTCATTATATTATTCACTC
TATCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_f05.g1 MSMg01no161_f05.g1 CHROMAT_FILE:
MSMg01no161_f05.g1 PHD_FILE: MSMg01no161_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:48 2005
         (380 letters)



>mm_chr9_3857526_3858305
          Length = 780

 Score =  696 bits (360), Expect = 0.0
 Identities = 375/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatagaggacataggaggtgcctactgaaggttagtagactgagccaggaactgtgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatagaggacataggaggtgcctactgaaggttagtagactgagccaggaactgtgaag 260

                                                                       
Query: 61  aattttaaagtagagagaaaagtaaaagcaaaagtcatagtatataaaatagcccagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttaaagtagagagaaaagtaaaagcaaaagtcatagtatataaaatagcccagaaa 320

                                                                       
Query: 121 tgtgaaatctcttattaaattagaaaacaaggcacatagttcattagaaatagcagtcta 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tgtgaaatctcttattaaattagaaaacaaggcacatagtttattagaaatagcagtcta 380

                                                                       
Query: 181 taattgtgggaggaacatcagatggactatgacatctgtgaggatttggaattttaaaaa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 taattgtgggaggaacatcagatggaccatgacatctgtgaggatttggaattttaaaaa 440

                                                                       
Query: 241 ctgaatttattgcaaaagtatctggatgatttttttttctatctaagtaaagaactttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaatttattgcaaaagtatctggatgatttttttttctatctaagtaaagaactttga 500

                                                                       
Query: 301 ggagaaacatgtgccaaagaatgttgtataatgttcctctggagctgtggactggaggtc 360
           ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||
Sbjct: 501 ggagaaacatgtgccaaagaatgttgtataaagaacctctggagctgtggactggaggtc 560

                               
Query: 361 taaaggagaaacaaactagg 380
           ||||||||||||||||||||
Sbjct: 561 taaaggagaaacaaactagg 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)