BAC Information

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BAC

Clone NameMSMg01-161I04
Chromosome9 (Build37)
Map Location 60,150,887 - 60,151,290
singlet/doubletsinglet
Overlap geneThsd4
Upstream geneAdpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161I04.T7 (MSMg01no161_i04.b1)MSMg01-161I04.TJ (MSMg01no161_i04.g1)
ACCAG360895AG360896
length1,2701,243
length of high quality
(start - end)
419 (29 - 447)96 (78 - 173)
definitionCHROMAT_FILE: MSMg01no161_i04.b1 PHD_FILE: MSMg01no161_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:12 2005CHROMAT_FILE: MSMg01no161_i04.g1 PHD_FILE: MSMg01no161_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTGGCTATGCGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
GGTCCTCAGGCCTTCCCCTTATAACTTCACCCACTGAGATCATGCATGCC
TTTAAACATATATTTGAAAACCATTTTGGTCAAGTCAGACAATATACCAT
TTTCCACCTTTATTCATTCTCTCCCTCTCCCTCTCTCTCCCTCCCTCCTT
CTCTCTCTGCCCTTATGCTTTCCCTCCCACCCTACCATCTACCGAGAGAT
GTCTGCAATCATGCTTTCTTATTGCCAATGCATGCATTATCAATGTACAA
CTCTGGAGTGATCTCTTACTTGCTGCTTGGCTTTTAACTACATGTCTGCA
TTCTGGATACTGAATGTACATTAGAACATTCTAGAAGAAATATAGTATTT
TCTTTTTATGTGAAAATGAACAAAAAGGAAAAAAGACAGAAAAGAATTAT
TTTTTGCCCCCCCACGCGGGGAGAGATAAAGGAGGAGAGAGGGAAAGAAG
AGAGGATGGAGAAAGAAAGGNTGTTGATTTAATGTATGTTGAGATATATT
ATATATTATTTTTTTATTATTTTTTTTTTTTTTTTCGATTTTTTTTTTTA
TTTTTTTTTTATTATTAATTTTTTAATTTTTATGTATTTTATTTATAATA
TTTTTTTATATTATTTATTGATATTATTTTTTTATTTTAGTTTATTTTTT
ATTTATTATATTTTATTTATATTATTTATATTAATGTTTATTTTATATTT
TTTTCCTACTTATTAATTTATTTAGTTATTAAAAAATAATTTTTTATTTT
TTTTTTAATAAAAAATAGTTAAAAATATTTTATTTGATAATATTTTATTA
TTATATATTTTATAATTTTTTAATTTCTTCTAAGATGATATTTTATCTTA
TAATATCCTTATCTATATTAATACTATATATTTTCCTTCTTTTTTTTTTA
CACTTCTCTACTCACTTTTTTATTTTTTTATATAATTTAAATCTTTTATT
ATACTTATTAAATTATTCTTATGATTTTTCCATATTATCATATTTTTATA
CTTAAATCGTTCATAATTTTTTTTCTTCTATCTTTTTTATGTTTACAATA
TTATTTTCACATCTACTCATCCATTCTTATGATTATTTATCATATTTTTA
TTTTTCATAATCTCTTTAATTTTTTTATTCGATCTTCTCTTATATATCAA
TTTATTAATTTATTTTTACAGTCACTTTCTCTTTGTAACTCANTTGTTTT
CTTGTACTAATCATTACTAC
NNGTGACATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCCCTTGTCTGCAGAATAGGATGGAATGTGGTTTTA
TGTTCCCTTCCCACCAGGATCGTGCCCAATTTGGCAACCGGATGCTAAAT
TAGGGTGGGATTAGTTGAGGGAAGTGGTCCCCTGTGTGGCTGCATGTCTA
GGGGAATGTTACAGAAAGCATATTGGTTATCTATTACTAAAAGACTGGGA
AGGGGCAAACAGTGTGTATCCCCAAAGATACCAAAAACATCTTCCTGTCT
TTCTGTGTTCCTTCATCCCTAACCATACTTACAGTAAAGGAACAATACAC
GTGGAATTACCCCACCTATTACTCTTGTTTCCCACCAATAATACCGGCTT
TTTGTTAGTCGCATGCAGGAGGAAAGACCTCACAAGATTAGGGGAACTGT
TTTTTGCCCCCCCCCCCGATATATGCCTCTCACTAAAAAAAAAAAAGGGT
TCCTTAGTTTCTTCCCTATGCACTAAACAGAATAACACCAACCCAGGTGA
TTGGTGGGAAGCCGGGGAAGGGGTTGTTCTGAAACTATGACCTGGGTGGT
GAGTGGCTGTCTCTGTCCTGCCGGGGATCTGACTAATATGTACGTCTGTC
CAACAGGGAGAACCCTTGATCAGGGCCACTTGGCATACTCTTCTGCCTTG
TCTCAGAAGTCCAGTGCTCTCTCATTATAGACTCGATGGTTTAAAACCAG
AGAGATGATTTCCCTCACAGTTCTGTAGACCAGATGTCACCATATATGTG
TGCTTTTCCAAAGTTCTGGGGGGAGAATCCTCATCATCTGTTGTCTCCCG
GCCCCCTGTGTCTTTATTTGTACCCGGGTATCTTTTGCTTAATTGGTTAT
GGTGCTTCCGTGTTTAGATTTTTCTTGCTTTTTAAAACCCTGGTCCTTTG
TTTTCTTTGCCCTGGTCTTGGTTTTAAATCCTTAATCAAGCTGTGTTTCT
TTTTGTTCCCCCTTTTGACATGCTTTTTAATGTTCTTTTTCTTATCTCTT
CTTTTTATTTCTTCTACCCCATTATCGCTTCTTATCACTAAATGTTCTTT
TTTTTCTCTCCATATTTTACTCATTCTCTCCTATATCTGATTATTTTACT
ATTTTATTATATCCGTTTTGACCATTTCTAATTTTTCTCATTTACTGCCT
TTATTATTCTCATTCTCTATAATTCCTCTATTCTTATTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_i04.b1 MSMg01no161_i04.b1 CHROMAT_FILE:
MSMg01no161_i04.b1 PHD_FILE: MSMg01no161_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:12 2005
         (419 letters)



>mm_chr9_60150673_60151491
          Length = 819

 Score =  683 bits (353), Expect = 0.0
 Identities = 391/409 (95%), Gaps = 11/409 (2%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcaggtcctcaggccttccccttat----aac--ttcacccactgagatcatgcat 69
           ||||||||||||||||||||||     ||    |||  ||||||||||||||||||||||
Sbjct: 215 gaattcaggtcctcaggccttc-----atgggaaacacttcacccactgagatcatgcat 269

                                                                       
Query: 70  gcctttaaacatatatttgaaaaccattttggtcaagtcagacaatataccattttccac 129
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gcctttaaatatatatttgaaaaccattttggtcaagtcagacaatataccattttccac 329

                                                                       
Query: 130 ctttattcattctctccctctccctctctctccctccctccttctctctctgcccttatg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctttattcattctctccctctccctctctctccctccctccttctctctctgcccttatg 389

                                                                       
Query: 190 ctttccctcccaccctaccatctaccgagagatgtctgcaatcatgctttcttattgcca 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctttccctcccaccctaccatctaccgagagatgtctgcaatcatgctttcttattgcca 449

                                                                       
Query: 250 atgcatgcattatcaatgtacaactctggagtgatctcttacttgctgcttggcttttaa 309
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atgcatgcattatcaatgtaaaactctggagtgatctcttacttgctgcttggcttttaa 509

                                                                       
Query: 310 ctacatgtctgcattctggatactgaatgtacattagaacattctagaagaaatatagta 369
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctacatgtctgcattctggatgctgaatgtacattagaacattctagaagaaatatagta 569

                                                            
Query: 370 ttttctttttatgtgaaaatgaacaaaaaggaaaaaagacagaaaagaa 418
              || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aaatccttttatgtgaaaatgaacaaaaaggaaaaaagacagaaaagaa 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)