BAC Information

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BAC

Clone NameMSMg01-162K05
Chromosome9 (Build37)
Map Location 64,658,196 - 64,658,367
singlet/doubletsinglet
Overlap genenone
Upstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a
Downstream geneAI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162K05.T7 (MSMg01no162_k05.b1)MSMg01-162K05.TJ (MSMg01no162_k05.g1)
ACCAG361705AG361706
length702703
length of high quality
(start - end)
187 (120 - 306)176 (134 - 309)
definitionCHROMAT_FILE: MSMg01no162_k05.b1 PHD_FILE: MSMg01no162_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:03 2005CHROMAT_FILE: MSMg01no162_k05.g1 PHD_FILE: MSMg01no162_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCCGAGGGGGCGCGGAAT
CAAGGGTTAGCAAAAAAAGCTAGNCTAGGCAAGTTAGTGAAAACTTATGT
CAAATTAATATTTTACCTGGAAATGTTAGCTCTGTAGCAGAACACTTACT
TAAAATGTGTGAGACCGTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCA
CCCGACTGCTCTTCTGAAGGTTCAGAGTTCAAATCCCAGCATTTTTTTGG
TGGCTCACAACCATCCGTAACGAAATCTGACTCCCTCTTCTGGAGTGTCT
GAAGACAGTTTACTANGTTTTACATATAATAAGTAAATAAATAAATAAAT
ATTTTTTTTCTTTCCCCCACCAACCCAAAGTGTGAGACCGTAAGTTCAGT
CACCAATACCACCACCGCCACCACCACCACCATCATCACCACCATGTCCA
CCACTCAACACACACACACACACACACTCACACTCTCACACACACACAAG
TTATTTCAATTTAATTACAATGTTTAACCAAGAATAATATATTTTTGCTA
CTCAGAAATAAGTGTCATTCAGGAGGGACAATTAACAGGTAATTCTCCAG
GGCTGGAGGTTGACACATTTAGTTAACAAAGGGCAAAGTTATATTCTGTG
AGTCTCTGAATATTACTAGTACCATAAATAATAGTCAAGAACCAATGGCT
GG
TTGAAGTGGGAGGCCTGGNGGCCGCCTGGATTCGAACTGGAGGNGAACNA
NAGAAGTTAACAGGACGACGGCGAACAANGAAGGAAGAAANAGGACCNTN
NAAAAAAAAATTCCTCCCGGNAGAAGNNAANCNATGCAAAACAGGCTTCA
TCTTTATTGCCAACCGAGATTACAGTTTTATTTTATACCTCCACTCCTTC
TCTTGGACTCATTCATCCAGACAATATTGTTGGAAAACCCAGCAGTTCTT
ACACACAACAGTCAGGGAACCAGAAAAGGTCTGCTTTGAGGGAGTTGAGG
TCTAGCGGTTTTTTATCATTTTCAACAACAACAACAACCAAAAATACTTA
ATGTTTGTTTAACACCCACAAAAGTTCTAGGAAGAATTCTAGGTAGCAGA
TAACAGGGTGGCTTTTGAAACCAGAGTGATCAAGGCTGTGCCTCTCTGAA
GTGCAGGAAGAAGCCAGTAATGGAAGAAAGGCCCCAGAGAATTGAGTAAA
GCAAAAAGATCATGCAGAGAACCTGCGATAGGGAGGAGCTTGGCTTTTAT
AACTGCGAGGAATCTGTGTTGATGAGAAATGTATTTTGCCTGGAGAAGCC
TTCCATTAAATTAGAGAGGGAGTTGAGAGCTCTGCCTTATAGGTTTTTTT
TTTTTTATACTATCCTTAATTCTAACTGCAGGTCGAAGCCCCCGAATGGT
CAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_k05.g1 MSMg01no162_k05.g1 CHROMAT_FILE:
MSMg01no162_k05.g1 PHD_FILE: MSMg01no162_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:03 2005
         (176 letters)



>mm_chr9_64657996_64658571
          Length = 576

 Score =  310 bits (160), Expect = 4e-89
 Identities = 169/172 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcaaaacaggcttcatctttattgccaaccgagattacagttttattttatacctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgcaaaacaggcttcatctttattgccaaccgagattacagttttattttatacctcca 313

                                                                       
Query: 61  ctccttctcttggactcattcatccagacaatattgttggaaaacccagcagttcttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||
Sbjct: 312 ctccttctcttggactcattcatccagacaatattgttggaaaacccagcagggctgaca 253

                                                               
Query: 121 cacaacagtcagggaaccagaaaaggtctgctttgagggagttgaggtctag 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cacaacagtcagggaaccagaaaaggtctgctttgagggagttgaggtctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)