BAC Information

Click to search

BAC

Clone NameMSMg01-163L13
Chromosome9 (Build37)
Map Location 13,884,366 - 13,884,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
Downstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163L13.T7 (MSMg01no163_l13.b1)MSMg01-163L13.TJ (MSMg01no163_l13.g1)
ACCAG362436AG362437
length734712
length of high quality
(start - end)
281 (52 - 332)309 (383 - 691)
definitionCHROMAT_FILE: MSMg01no163_l13.b1 PHD_FILE: MSMg01no163_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:22 2005CHROMAT_FILE: MSMg01no163_l13.g1 PHD_FILE: MSMg01no163_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTTTCAACCCATCTGGTCCTGGGCTTTTTTTGGTGGGA
ACTTTTAATGACTGCTTTCTTCAGGGATAATGGGAGTGTTTAGATGGTTT
ATCTGATCCTGATTTAACTATGGTATTGGTTGTCTGTCTAGAAAATTGTC
CCTTTCATCTAGACTTTCCAGTTTTGTTGAATATAGGCTTCTGTAGTATG
CTCTGATGATTTTTTTAAATTTCCACAGTTTTTTTGTTTGTTTTTGTTTG
TTTGTTTGTTTGTTTTTTTTTTTTCTCCCTTTTCATCCCTGACTTTGTTA
CTTTTTTTTTTTTCCCCCCCCCCCCAGACTAGTCTGACTTTTTCCTTACC
CCTCTTGTTTTCCCCCCCCAACAAACTTCTCTTGTTTTTTCTGCTTCCTT
CCTTATTTCCTTTATCTCCCTCTTTTTATTTCTTTCTCCCTCCTCCTTAT
CTCCTTTTTCATTCCATTCCCCATCCTTTTTTCTACCCCCTTATTTCTTC
TTATTCTTTTTATTTATTTTAATTTTGTTTTATCTGTTTCTGCTCGTTTT
CCCATCTTTTTTTTTTCTGTTGGTCCCTCTCCACTCATACCTTTTCTTCC
CTCACTGCTTTTTAATTTTTTTTTCACTTTTTTTTCTCTTATTTTCTTCC
TGTACTCCTACTTCTTTACTTCCACTTTCATATT
NNNAAATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTGCCTCCTCAATG
TCCCACTTCCTATTCTACCCTTTCCTATAGGCCATAGGTTTTGTAATTGA
CAGGTGATAGATTACTGAGAGAGAGATCTTGAAGCTCTGGGGAGGCAGAG
CTGGTGTTTGTGGGAGAGGCATTGACTAGGAGAAACATGTGGTCTTGGAC
TATGCACCGGGCTGGGAACAGACCAAGACCACTGGTGCCTAACCAGCAAT
AGCATGCATTGTTTTTTAATAATTACACGCTACATACATCCATGTAATAC
ATAAGATATTCTTTTTTCCGACCCCCCCACGCATTTCTGTTCATCAAAGA
CATAGAGACACCTGTACTTAAAGCAGAATGAAATATATAACCTGATGAGA
CGTGGGTACATACACACAGAAGAGGAAATGGGTGGTAACTACACAAGAAT
ACCTGATCATTCTCATTAAAAAGATGATACCAAGGTGCCACTCTGTAAAT
TCCTAGAAGCCTGGAAGTGCATAGCTGGTAAATTAAGGAACACTAGCATT
GTCTGTCCACTGTTGGAAGATGGTTAGACAGACCATCAGAGCCTGAAACA
CCATCCGTCATTCTGTAGTGAAGTTAATGATGAGCTATGAAACTGGATGA
GAACTTACAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_l13.g1 MSMg01no163_l13.g1 CHROMAT_FILE:
MSMg01no163_l13.g1 PHD_FILE: MSMg01no163_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:22 2005
         (309 letters)



>mm_chr9_13884166_13884874
          Length = 709

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctgttcatcaaagacatagagacacctgtacttaaagcagaatgaaatatataacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctgttcatcaaagacatagagacacctgtacttaaagcagaatgaaatatataacc 260

                                                                       
Query: 61  tgatgagacgtgggtacatacacacagaagaggaaatgggtggtaactacacaagaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgagacgtgggtacatacacacagaagaggaaatgggtggtaactacacaagaatac 320

                                                                       
Query: 121 ctgatcattctcattaaaaagatgataccaaggtgccactctgtaaattcctagaagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatcattctcattaaaaagatgataccaaggtgccactctgtaaattcctagaagcct 380

                                                                       
Query: 181 ggaagtgcatagctggtaaattaaggaacactagcattgtctgtccactgttggaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagtgcatagctggtaaattaaggaacactagcattgtctgtccactgttggaagatg 440

                                                                       
Query: 241 gttagacagaccatcagagcctgaaacaccatccgtcattctgtagtgaagttaatgatg 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gttagacagaccatcagagcctgaaacaccatctgtcattctgtagtgaagttaatgatg 500

                    
Query: 301 agctatgaa 309
           |||||||||
Sbjct: 501 agctatgaa 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)