Query= MSMg01no164_e04.b1 MSMg01no164_e04.b1 CHROMAT_FILE:
MSMg01no164_e04.b1 PHD_FILE: MSMg01no164_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:04 2005
(323 letters)
>mm_chr9_104355143_104355865
Length = 723
Score = 617 bits (319), Expect = 0.0
Identities = 319/319 (100%)
Strand = Plus / Plus
Query: 5 gaattcaaatggactgcatatttctatttccaacagccttttacccagataaaattacca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatggactgcatatttctatttccaacagccttttacccagataaaattacca 264
Query: 65 tgcactacaatttccatattcaatctgaataatttgatgtgtgttgggcctggctttgag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcactacaatttccatattcaatctgaataatttgatgtgtgttgggcctggctttgag 324
Query: 125 tcacaaagaagaaaaacgttacccaatgtacatatacacgtacaatcttttagaatgcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcacaaagaagaaaaacgttacccaatgtacatatacacgtacaatcttttagaatgcta 384
Query: 185 atatttactctgtaatttgtatgcaggaagtctatcatttctattttgatgttttaagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatttactctgtaatttgtatgcaggaagtctatcatttctattttgatgttttaagag 444
Query: 245 ctcatgattaagagagttcacgagtctcaaaagatactctgtacttagattttttaatat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcatgattaagagagttcacgagtctcaaaagatactctgtacttagattttttaatat 504
Query: 305 agaagtcacttattttctc 323
|||||||||||||||||||
Sbjct: 505 agaagtcacttattttctc 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_e04.g1 MSMg01no164_e04.g1 CHROMAT_FILE:
MSMg01no164_e04.g1 PHD_FILE: MSMg01no164_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:04 2005
(527 letters)
>mm_chr9_104513655_104514581
Length = 927
Score = 795 bits (411), Expect = 0.0
Identities = 512/595 (86%), Gaps = 76/595 (12%)
Strand = Plus / Minus
Query: 1 tagtgatagaagtttggcaccagtatttctgaaacattgtaaaaatgtacaaatgcttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tagtgatagaagtttggcaccagtatttctgaaacattgtaaaaatgtacaaatgcttaa 833
Query: 61 agaactatagagatgtacaaggttgatgggggagaataatgggctacaacaagaaggtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 agaactatagagatgtacaaggttgatgggggagaataatgggctacaacaagaaggtat 773
Query: 121 gatgaggctgggcagtggtgggggcacacgcctttaatcctagtactcgggagacagagg 180
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 772 gatgaggctgggcagtggtgggggctcatgcctttaatcctagcactcgggagacagagg 713
Query: 181 caggtggacctctgagttcaagaccaagaccattgtgaactacagagtgagttccaagac 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 712 caggtggacctctgagttcaagaccaagaccagtgtgaactacagagtgagttccaagac 653
Query: 241 aaccagagctacatagagaagcccagtctggagaagaaaaaaaaagtatgataagaacat 300
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 652 agccagagctacatagagaagcccagtctggagaaggaaaaaaaagtatgataagaacat 593
Query: 301 gtctctctatcattgttttgatgcaaaccattgtctacagaaaaacttctgggttctggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtctctctatcattgttttgatgcaaaccattgtctacagaaaaacttctgggttctggc 533
Query: 361 atccctccaactttgtaattcatttgcctaaaaa----------------agtgtgtg-- 402
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 532 atccctccaactttgtaattcatttgcctaaaaatctgtgtgcctgagtgagtgtgtgtg 473
Query: 403 ----------------------------------------------------------cc 404
||
Sbjct: 472 tgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcc 413
Query: 405 tgagtgtctgcctgcctgcctgtgtccgggtttcccaaaatatttgttatgtttgaatgt 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 412 tgagtgtctgcctgcctgcctgtgtccgggtttcccaaaatatttgttatgtttgaatat 353
Query: 465 gagatgttcccccataagctcatatcattgaatctacaaagccggtggtgctgtt 519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gagatgttcccccataagctcatatcattgaatctacaaagccggtggtgctgtt 298
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
