Query= MSMg01no165_m09.b1 MSMg01no165_m09.b1 CHROMAT_FILE:
MSMg01no165_m09.b1 PHD_FILE: MSMg01no165_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:04 2005
(638 letters)
>mm_chr9_76599142_76600174
Length = 1033
Score = 1166 bits (603), Expect = 0.0
Identities = 625/635 (98%), Gaps = 7/635 (1%)
Strand = Plus / Plus
Query: 5 gaattcaccagtagataccttatgtcacctcagaggaacaggggctgtacataagatctt 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagtaggtaggttatgtcacctcagaggaacaggggctgtacataagatctt 264
Query: 65 gattttacccaaagaatggcaggacttcccagtaagatggataaaaccaatcaagggttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattttacccaaagaatggcaggacttcccagtaagatggataaaaccaatcaagggttg 324
Query: 125 aattttgtgggcatggaaatatagaactacaaaaagtattcttgtgaaactaattcatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattttgtgggcatggaaatatagaactacaaaaagtattcttgtgaaactaattcatca 384
Query: 185 ttgcagtaaaaatataggctataatgttagtaaaataatactctattttattcagatcct 244
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 ttgcagtaaaaatataggctataatgttagtaaaataatact--attttattcagatcct 442
Query: 245 cataattgaccacatcaaaaatactcagtcaactcacccatatacaaatattatttatgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cataattgaccacatcaaaaatactcagtcaactcacccatatacaaatattatttatgg 502
Query: 305 gctattctgatttccttagatcaaatagacatggtagattttgttgttgtttgtttgttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctattctgatttccttagatcaaatagacatggtagattttgttgttgtttgtttgttt 562
Query: 365 gtttaaattcttcactatgactgagatatttgatgcattttttgtgctttattgtaattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ----aaattcttcactatgactgagatatttgatgcattttttgtgctttattgtaattt 618
Query: 425 tattttttctttttctaaagtaattttattccacagtagtagatttccacccttgactgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tattttttctttttctaaagtaattttattccacagtagtagatttccacccttgactgg 678
Query: 485 ctgctgtttcctgataggtagtgatttcccttttctttaccaccacagccttataataat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgctgtttcctgataggtagtgatttcccttttctttaccaccacagccttataataat 738
Query: 545 aatttt-gaaaaataatctaacaaagatgtagccgttgccttgattggatacacactgag 603
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatttttgaaaaataatctaacaaagatgtagccgttgccttgattggatacacactgag 798
Query: 604 aatcttgcgtctattagtttttgcaattcatgata 638
|||||||||||||||||||||||||||||||||||
Sbjct: 799 aatcttgcgtctattagtttttgcaattcatgata 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1033
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1023
Effective search space: 642444
Effective search space used: 642444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_m09.g1 MSMg01no165_m09.g1 CHROMAT_FILE:
MSMg01no165_m09.g1 PHD_FILE: MSMg01no165_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:04 2005
(667 letters)
>mm_chr9_76694421_76695487
Length = 1067
Score = 1249 bits (646), Expect = 0.0
Identities = 661/666 (99%)
Strand = Plus / Minus
Query: 1 actttttagaaacagaggtaagatactgagccaaagtccaggcaagaacatactgttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 actttttagaaacagaggtaagatactgagccaaagtccaggcaagaacatactgttatt 807
Query: 61 tttcacaacatgaatatcagggtgatcttatgtaatgataacttgactactgagaattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tttcacaacatgaatatcagggtgatcttatgtaatgataacttgactactgagaattca 747
Query: 121 tttgcaccaaaacatacttcactatgatgggcaaaagttcttccacatgctgtgtagtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tttgcaccaaaacatacttcactatgatgggcaaaagttcttccacatgctgtgtagtaa 687
Query: 181 attctcttagacaacattttatacacattgctgcttctccaacattcaatttaaaaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attctcttagacaacattttatacacattgctgcttctccaacattcaatttaaaaactg 627
Query: 241 aagggaattaggaacagcgactgcactgttaaaatcctgaggtgtgcaggattgaaagag 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 626 aagggaattaggaacagcgactgcactgttaaaatcctgaggtgcgcaggattgaaagag 567
Query: 301 acagcacacgaggaggcagtagactacacactacagcagacatgcaatattggacttgta 360
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 566 acagcacacgaggaggcagtagactacacactacagcagacatgaaatcttggacttgta 507
Query: 361 atattacaattaaaagatcaacactgtatgaaaaggagtaagtctaatttcttaaaggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atattacaattaaaagatcaacactgtatgaaaaggagtaagtctaatttcttaaaggaa 447
Query: 421 gacattgaaaatattgagaaagagagaaatctatgtcactgcctttatctgttaacctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gacattgaaaatattgagaaagagagaaatctatgtcactgcctttatctgttaacctgc 387
Query: 481 tgaaagctaatgagaaaatagatctcaagatgacttgaaaagtatttttcatgttagcct 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgaaagctaaggagaaaatagatctcaagatgacttgaaaagtatttttcatgttagcct 327
Query: 541 ataaagcaagcatgctgtgtcagctgatgaactaggtaaagggtaaaagaaaataataaa 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 326 ataaagcaagcatgctgtgtcagctgatgaactaggtaaagggcaaaagaaaataataaa 267
Query: 601 agtataacactagaaatgaaattctattaagttacttataaagtattgtaaatattaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtataacactagaaatgaaattctattaagttacttataaagtattgtaaatattaaaa 207
Query: 661 agtaag 666
||||||
Sbjct: 206 agtaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
