BAC Information

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BAC

Clone NameMSMg01-166K10
Chromosome9 (Build37)
Map Location 91,835,793 - 91,836,051
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166K10.T7 (MSMg01no166_k10.b1)MSMg01-166K10.TJ (MSMg01no166_k10.g1)
ACCAG364411AG364412
length744720
length of high quality
(start - end)		268 (47 - 314)638 (75 - 712)
definitionCHROMAT_FILE: MSMg01no166_k10.b1 PHD_FILE: MSMg01no166_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:13 2005CHROMAT_FILE: MSMg01no166_k10.g1 PHD_FILE: MSMg01no166_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGTAGGGCACCCTTGTTCCCCAGCAGATGGTACACTGAGATTC
ACCACACCATTACGTTTAATGGGTTGGAATTCATTTGGATTTCTTGATGT
TCTCTCTGTCCTCCTTGCCGTCGCAATGCTGCCCATGTTCCTGGCTACAT
ATGATTTGAGAGAGAATGTTTGAAGAAGAAAAATCCCTTTATTATTCATA
AATGAGTGTTTTATATCAAAGTTTAAAGTGTGTATGTATTGTGTGCTCTT
GGAGGAAAGAGCGATTATTTTATATTCAGCATTATAGATTCATACATTCA
AAATTGNCATGAGCTCCCTTAACAATGCCAAAAGGATTATTGATTATAGC
TGTGTTACTGCCCCCCCAAAAAAAAAAAAAAAAATTGTGCCGTGGTTTGG
GTTTCATATCATGCAATAAAGATGTTTATCTTCCATTAATTATTTTTTAC
TAACCCCCTTATTTCAAAAAAACACCCCTCGTTTTTTACCTACCCCCTTA
CTTCTTTTCTATCTTTTTCCCTCCCCCCCCTTTCTATCCCTTTTTTTTTT
CTTCCTCTTCCCCCCCCCTTTTATTCCCCACCTTCTCTTTTCTATTTCCT
CTTTCCACCCTTTTTTTATTCCCCCCTATTTCTTCCTCCCCTCCTTATAT
AAATCCCTCACTATATCCCTCCCTACTATTTTCTTTTACACCAG

CAATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCACTAAAACCATCTGACCCTGAGC
TTTGTTTGGCTGGAATCCATTTAATGACTGCTTCTATTTTTTTTAGTGGT
TATAGGACTGTTTAAATTATTTACCTAATTTTTATTTAACTTTGGTAAGT
GGTATCTGTCTAGAAAACCATTAATTTCTTTAAGATTTTTCAATTTTATA
GAATACAGACATTTTAAGTAAGACCTACTGATTCTTTGAATTTCCTCAGT
GTCAATTATGATGTCTCTCTTTTTATTACTGATTTTGGTTTTTGTGGATA
TTTTCTCTGTCTTTTGGTTAGTTTGGCTAAGGGTTTGTTTACCTTAACCA
GTTCTTGGTTTCCCTGATTTTTTGTATTGTTTACTTAGTTTCTATTTGAT
TGATTTCAGCCCTAATTTTGATTATTTCCTGCCTTCTACTCCTCTTTGGC
ATGCTTGCTTCTCTTATTTTTAGCACTTTCAGCTGTACTTTTAAATTGCT
GGTAGGAGAACTTTCTAATTTATTTATGGAGGCATTTAATGTTATGAACT
TCCCTCTTTCATTGTGTCCCATAAATTTGGATATGTTGTGCCTTCATTTT
CATTGAATTCTAGAAAGTCTTTAATTTCTTTCTTTATTTTCTTTATTTTT
ACCCTGAGCCAGAGATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_k10.b1 MSMg01no166_k10.b1 CHROMAT_FILE:
MSMg01no166_k10.b1 PHD_FILE: MSMg01no166_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:13 2005
         (268 letters)



>mm_chr9_91835589_91836254
          Length = 666

 Score =  447 bits (231), Expect = e-130
 Identities = 253/261 (96%), Gaps = 2/261 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtagggcacccttgttccccagcagatggtacactgagattcaccacaccat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaattccagtagggtacccttgttccccagcagatggtacactgagattcaccacaccat 404

                                                                       
Query: 65  tacgtttaatgggttggaattcatttggatttcttgatgttctctctgtcctccttgccg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 403 tacgtttaatgggttggaattcatttggatttcttgatgttctctctgtcctccttgctg 344

                                                                       
Query: 125 tcgcaatgctgcccatgttcctggctacatatgatttgagagagaatgtttgaagaagaa 184
           | |||||||||||| ||||||||| |||||||||||||||||||  ||||||||||||||
Sbjct: 343 ttgcaatgctgcccgtgttcctggttacatatgatttgagagag--tgtttgaagaagaa 286

                                                                       
Query: 185 aaatccctttattattcataaatgagtgttttatatcaaagtttaaagtgtgtatgtatt 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 285 aaatccctttattattcataaatgagtgttttatgtcaaagtttaaagtgtgtatgtatt 226

                                
Query: 245 gtgtgctcttggaggaaagag 265
           |||||||||||||||||||||
Sbjct: 225 gtgtgctcttggaggaaagag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 666
Length adjustment: 9
Effective length of query: 259
Effective length of database: 657
Effective search space:   170163
Effective search space used:   170163
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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