BAC Information

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BAC

Clone NameMSMg01-167B11
Chromosome9 (Build37)
Map Location 47,647,045 - 47,794,077
singlet/doubletdoublet
Overlap geneCadm1
Upstream gene2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167B11.T7 (MSMg01no167_b11.b1)MSMg01-167B11.TJ (MSMg01no167_b11.g1)
ACCAG364711AG364712
length733735
length of high quality
(start - end)
179 (98 - 276)329 (172 - 500)
definitionCHROMAT_FILE: MSMg01no167_b11.b1 PHD_FILE: MSMg01no167_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:46 2005CHROMAT_FILE: MSMg01no167_b11.g1 PHD_FILE: MSMg01no167_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,647,045 - 47,647,223)(47,793,749 - 47,794,077)
sequence
TTTCGAAGAGGATCCGCGGAATTCATTTATTACCCAAGACAAACAGGTTA
ACACCCGCCTTAAACAGCCCGTCGATAAATTAGAGTACTGTGTTGCCCAT
TTAATGCTAAACTGTGATAATGAATAATGTTACCCACTCCCTGCTGTACT
GGGTAGAGAGTCCATCCTTTCCACATTAGGGATTAATGTTTCACACTTTC
AGAGCTTCCCCTGCCCTGCCCCCACCTCCATTCCCCGATGCCTGCCTCAG
TTAATGACAGTTTCATAGGCAGCATATGGTATGCCGCCCTCACCCAGCAA
AGTGAGATGCCCGGCTGATCCTCCTTTGTAATCTGCATTTAAACGAAAAA
AAAAAAAAATAGATTTGGGTCCTATCTCACTGCACCAATTATTGGCCAAC
TTGGAGGCTTGGCTCTTATCCGATTCTTTCTCGAACCCTTTTATTTAGTT
TGTGGCTCTTAAGTTAATTGACTGATAAATCCACATGTAATTTTGAATTC
GCTTATTCGATACACTCTGCCTGTTTTTCGCCGACATTGTGACGGCTATT
ACCATCCATGATGCCATTTACCAGCTTCTACTCTTATCTATCCGTTCCAA
TCCTATTGATCTTATGTTTATTTATCCCTATCTTTCATCTGCCCTTTCTC
CCCCGTTAGTCATTCCATTAGTCCTCCCCTGGATATTGCCATTTAACGCT
AATCTCCCCGGTTACATTATTTTATGACCCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTGACAGTGACCACGGTGGG
GGCAGGAGGCCAAGGTTGATTTCACTTTCCATGAAACTGCTTTGCAGTTG
CCCAGTGCCAGCAAGGTACACGCAGCTCTTCGGAGGGAGGAGTTTGCATT
GAATCTGTTAAGAAAGGAAACTCCAGACCCCTCTGTTGGAAATGACAGCT
CTTGACAAGATGAAAGGGGGAGTCTTGCTCAGATCTTCACTTAAAACAAT
CTGGAGTTCCATTAGTATTCACTGAGGAGCTGCAGCACAGAGCAAGTTAC
AAGCATCATGAATAAAATTAAAACTAGTATTGACTCTCTCAGCACTGCAG
ATGGGAGAGGGCTGCCCGGAGCTGGCCAGGTTCCTGCAGCCTTGATCCTT
AGTGGCCACACAGGACCCTCCCAAAGCAATGCCTGTCCATCTTAATCTGG
CAATGTGGTGTTCTGGATAACCACATTTCTACTATGCCTTTACATCAGCA
CACATCTGTGCTCCAACTTCGGTGAATAAAGTCTGACCCATCCCGCTATT
GTTGTAGAATGGGCCCCACTCCGGGGGTGCATCCATTTGGCTCCCCGATC
TTCCCGTATTTGTGTTGTATTTAACCCGATCATTTGCCTCAGACCTGCCC
TCACCCCCCTCACTTTACACGCCCGACCACATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_b11.b1 MSMg01no167_b11.b1 CHROMAT_FILE:
MSMg01no167_b11.b1 PHD_FILE: MSMg01no167_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:46 2005
         (179 letters)



>mm_chr9_47646845_47647423
          Length = 579

 Score =  339 bits (175), Expect = 8e-98
 Identities = 178/179 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttaatgctaaactgtgataatgaataatgttacccactccctgctgtactgggtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttaatgctaaactgtgataatgaataatgttacccactccctgctgtactgggtaga 260

                                                                       
Query: 61  gagtccatcctttccacattagggattaatgtttcacactttcagagcttcccctgccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtccatcctttccacattagggattaatgtttcacactttcagagcttcccctgccct 320

                                                                      
Query: 121 gcccccacctccattccccgatgcctgcctcagttaatgacagtttcataggcagcata 179
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccccacctccattccccggtgcctgcctcagttaatgacagtttcataggcagcata 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no167_b11.g1 MSMg01no167_b11.g1 CHROMAT_FILE:
MSMg01no167_b11.g1 PHD_FILE: MSMg01no167_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:46 2005
         (329 letters)



>mm_chr9_47793549_47794277
          Length = 729

 Score =  605 bits (313), Expect = e-177
 Identities = 325/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagctcttcggagggaggagtttgcattgaatctgttaagaaaggaaactccagacccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 529 gcagctcttcggagggaggagtttgcattgaatctgttaagaaaggaaactccaaacccc 470

                                                                       
Query: 61  tctgttggaaatgacagctcttgacaagatgaaagggggagtcttgctcagatcttcact 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 469 tctgttggaaatgacagctcttgacaagatgaaagggggtgtcttgctcagatcttcact 410

                                                                       
Query: 121 taaaacaatctggagttccattagtattcactgaggagctgcagcacagagcaagttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taaaacaatctggagttccattagtattcactgaggagctgcagcacagagcaagttaca 350

                                                                       
Query: 181 agcatcatgaataaaattaaaactagtattgactctctcagcactgcagatgggagaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agcatcatgaataaaattaaaactagtattgactctctcagcactgcagatgggagaggg 290

                                                                       
Query: 241 ctgcccggagctggccaggttcctgcagccttgatccttagtggccacacaggaccctcc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 289 ctgcctggagctggccaggttcctgcagccttgatccttagtggccacacaggacccacc 230

                                        
Query: 301 caaagcaatgcctgtccatcttaatctgg 329
           |||||||||||||||||||||||||||||
Sbjct: 229 caaagcaatgcctgtccatcttaatctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)