BAC Information

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BAC

Clone NameMSMg01-167F18
Chromosome9 (Build37)
Map Location 117,884,834 - 117,885,207
singlet/doubletsinglet
Overlap geneLOC100039681
Upstream geneRbms3, LOC665840, LOC100039650
Downstream geneAzi2, 2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768, Ctdspl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167F18.T7 (MSMg01no167_f18.b1)MSMg01-167F18.TJ (MSMg01no167_f18.g1)
ACCAG364872AG364873
length830742
length of high quality
(start - end)		129 (70 - 198)542 (76 - 617)
definitionCHROMAT_FILE: MSMg01no167_f18.b1 PHD_FILE: MSMg01no167_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:06 2005CHROMAT_FILE: MSMg01no167_f18.g1 PHD_FILE: MSMg01no167_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCACTAGCAAGGAACATTTTTTTTGTTTGTGGAGCAGGTGTAT
GTATGTGTATGCATGTGTGTTTGAGAGTGTGTAAGATGCATGAGTATGCA
AGGATGTGTGTATGTATAAGTTTGAGTGTGTGTGTGTGTGTGTGTGTGCG
TGTTTTTTTCCCTTCTCCTCCCTTCCCTCTTTTCCCTTTTCCCCCTTTTT
CCTTTCTTCCCCCCTTCCCTTCTCCTTCCCCCCCCCTCCCCCTCTTCCTT
TTTTTTCTCTCCCCCCCCCCCCCTTTTTTTTTTCTTCCCCTCCCCCTTAC
TCCCCCCTCCCCCTCTTTTTTTTTTTTTCCCCCCCCCTCCCCCCCCCATC
TCTTCCCCTCTTCCCTACTTTTTTCCCCCTCTTTTTTCCTTTCTTCCTTT
TTTTCCTTACCTCCCCCCCCTTCCTTCTTACCCTCCTCTCCACCCCCCTC
CTCCTCCTCTCCTCTTTTCTTCCCCCTTTCCTCTTTTTTTTCCTTCTTCT
CCCTCTTTTTCTCCTCCCTCCCCCCTCTCCCCATCCCCCCCTTTTTTTCC
CTCCCCCCTCCCCCTCTCTTCTCCCTTACCCCTCCCCTCCCTTTCCTTTC
TTCTTCCCCCTTCCCCCCCCCCTCCTCCCCCCCCCTCTCCACCTCCCTCT
CCCCCCCCTTCCCCCTCCCCCCCTTCTCCCCCTTTCTCCTTTTCCTTTCC
CCTCGCTTTTTTTTTATTTTTTTCCTCTCCCCTCTTCCCCCCCCCTCATT
TTCTCCCTTTCCTTCCGCCCCTATCCTCCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTT
TTAATGGGGTTATTTGATTTTCTGGGGTCCACCTTCTTGAGTTCTTTATA
TATGTTGGATATTAGTCTCCTATCTGATTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGTCTTTTTGTGTTATTGACAGTGTCTTTTCAGGCA
ATATCTTATAATAGTGATGAAGTTCTCAAATATTTATTGGAGTTGCCTTT
CAAAATGTCAATGTATTTCTTTACATTATGATGTCTCAGGCTGATAGCTA
TACGTTTCTAAAGTTATAATTCCTAAGAAATAATATAAAGTCATGTTCAA
AGATAGGTGAGTTAATAAACCTGTAATCTTGGCAACTGTGAAGGCAAAGA
CAGGAGGATAGGTGTTTAGACAGAGCCCAGACTGTGCAGTGAGTTTGAAG
CTAGCCCAGGCAACTTGATGAGACCTTGTCTCAAAAGACAAAAGAAAACA
AAAAACATAGGTGTTAGGAGATCCCTCAGTGATAGAACACCTGCTTAGCA
TCCACAAGGCCTAGGGTTTAATCCCAACATTTCAGTGAACGAATGAATGA
ATGAATGATCATAATTTTGGTCAATATTTAGCCATTTTGGTGAATTTATG
ATGATAAGTAAAACATCTTGTAATATGTATTTCGTTTTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_f18.g1 MSMg01no167_f18.g1 CHROMAT_FILE:
MSMg01no167_f18.g1 PHD_FILE: MSMg01no167_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:06 2005
         (542 letters)



>mm_chr9_117884620_117885562
          Length = 943

 Score =  630 bits (326), Expect = 0.0
 Identities = 362/374 (96%), Gaps = 1/374 (0%)
 Strand = Plus / Minus

                                                                       
Query: 170 caggcaatatcttataatagtgatgaagttctcaaatatttattggagttgcctttcaaa 229
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 588 caggcaatatcttataatagtgatgatgttctcaaatatttattggagttgcctttcaaa 529

                                                                       
Query: 230 atgtca-atgtatttctttacattatgatgtctcaggctgatagctatacgtttctaaag 288
           ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 528 atgtcacttgtatttctttacattatgatgtctcaggctgatagctatatgtttctaaag 469

                                                                       
Query: 289 ttataattcctaagaaataatataaagtcatgttcaaagataggtgagttaataaacctg 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 468 ctataattcctaagaaataatataaagtcatgttcaaagataggtgagttaatatacctg 409

                                                                       
Query: 349 taatcttggcaactgtgaaggcaaagacaggaggataggtgtttagacagagcccagact 408
           ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct: 408 taatcttggcaactgtgaaggcaaagacatgaggataggtgttcagacagagcctagact 349

                                                                       
Query: 409 gtgcagtgagtttgaagctagcccaggcaacttgatgagaccttgtctcaaaagacaaaa 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtgcagtgagtttgaagctagcccaggcaacttgatgagaccttgtctcaaaagacaaaa 289

                                                                       
Query: 469 gaaaacaaaaaacataggtgttaggagatccctcagtgatagaacacctgcttagcatcc 528
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 288 gaaaacaaaaaacataggtcttaggagatccctcagtgatagaacacctgcctagtatcc 229

                         
Query: 529 acaaggcctagggt 542
           ||||||||||||||
Sbjct: 228 acaaggcctagggt 215


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space:   496356
Effective search space used:   496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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