BAC Information

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BAC

Clone NameMSMg01-167G11
Chromosome9 (Build37)
Map Location 111,132,672 - 111,133,363
singlet/doubletsinglet
Overlap geneMlh1
Upstream geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2
Downstream geneEpm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167G11.T7 (MSMg01no167_g11.b1)MSMg01-167G11.TJ (MSMg01no167_g11.g1)
ACCAG364904AG364905
length744742
length of high quality
(start - end)		695 (46 - 740)667 (76 - 742)
definitionCHROMAT_FILE: MSMg01no167_g11.b1 PHD_FILE: MSMg01no167_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:09 2005CHROMAT_FILE: MSMg01no167_g11.g1 PHD_FILE: MSMg01no167_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCCTCTAACACACACGCACGTGCATACACACACACACACAGCTT
ATTTAGCATCTGCTGCTGTGTACCTCAGTGGCCAGTCGAAGAATGAAGAT
AGGCAGTCCCTCCAAAGGTGGCACATAGCTGTCAATCAGAAGAGGTAATC
CAATCAGGTTCCCTTCCTGCTTGTGGGGAGAAGGCCAAGAAAGGTGGGTA
AGAAAGAATGGCACTATGGCTGATAGGTTTCATGTCTCTGGTGCTTCTCC
AAGCCTTGGCGTGCAGGTTGCAGGATGGACCCCGTGAGCTGACAGCGTTT
AAAAAGAGCCTGTGGTTGAGAACTCTTTCTTCTGGATCTGCTTGCAAATG
TCAGGACAGGAAGCCCCAAAGAACGGGGGAAAGGAAGAAATGGAGCGAGT
GTTGAGAGTTCATTTACTCTGTGGCCTGCAGCGACTGGGCTTCAGCTTTC
CCTCGTGGAAGAGTCCTTTGAGAGGGAACAGCAGGAATAGTATGGCTGTA
GTATCTCCAGTGCAAATGAGAAATGGAGGAAATACCATGTATGATAGATA
CATGCTGCTTCTGAGGGGAGGCCAGCCTTTTTGTCCCAACCTAGGGACTT
GACTCTTATCTGAAAAATAACTCCAAACGACCCCACCCAATTTAAAGATA
ACTCAAAGACATCCAGATGGCCCCACCCACCTTATTAATTTAAN

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTACTAGGGGCTGAAAAAAATAG
GAGGGGTCAGAGAGGTAAAACACTCAGTGTGCGAGAGTGAGCCAGAGTGC
AGATCCCCAGCATCCACCAGTGCAGAGCAAAAGTGGTGGCCTGGCTGGAA
GCCCGGAGCCAGTGAAGATAGACAGCATCCTTAGAGCAGTCTTGCTTTTT
AGACTAGCTTCACTGATGAGCTCCAGATTCGGTGAGAGACTGCCTCAATA
TACAAGGTGCAGAGCAATCCTCCCTGTGTACATACACACACGTGCAAACA
CCCATGCACACACACTCATGCTCATGCACACATATAACACATACATGCAT
AGCCCATGCATGTGAAAAAATTCTAACTAGCAATGGTGGTGTCCACCTAC
AATCCCAGCACTTAGGAGGCAGAGGCAGGAAGCTAGGGAATTTAAGTGGG
TTTGACATCTGCCTGACTTTCTGAGACCCTGTCTCAAAAAAAAAAAAAAG
GAGTGGGAAGGAGCAGGGGAGCTAGGAAGATATCTCAGTTGATAAAGTAC
TGTGCCTGAGGACCTCAATTCAAGCCCCAACACCCACGTACAAAGCCCGG
CATGATGAGATACGTTTGTAATTCCAGACAAGTGGATTCCTAAAGCTCAC
TGGCCTAGCCTCATTATGAGCCCCAGGTCCCAGTAAGAATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_g11.b1 MSMg01no167_g11.b1 CHROMAT_FILE:
MSMg01no167_g11.b1 PHD_FILE: MSMg01no167_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:09 2005
         (695 letters)



>mm_chr9_111132469_111133563
          Length = 1095

 Score = 1323 bits (684), Expect = 0.0
 Identities = 690/692 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccctctaacacacacgcacgtgcatacacacacacacacagcttatttagca 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccctctaatacacacgcacgtgcatacacacacacacacagcttatttagca 263

                                                                       
Query: 64  tctgctgctgtgtacctcagtggccagtcgaagaatgaagataggcagtccctccaaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgctgctgtgtacctcagtggccagtcgaagaatgaagataggcagtccctccaaagg 323

                                                                       
Query: 124 tggcacatagctgtcaatcagaagaggtaatccaatcaggttcccttcctgcttgtgggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggcacatagctgtcaatcagaagaggtaatccaatcaggttcccttcctgcttgtgggg 383

                                                                       
Query: 184 agaaggccaagaaaggtgggtaagaaagaatggcactatggctgataggtttcatgtctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaaggccaagaaaggtgggtaagaaagaatggcactatggctgataggtttcatgtctc 443

                                                                       
Query: 244 tggtgcttctccaagccttggcgtgcaggttgcaggatggaccccgtgagctgacagcgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggtgcttctccaagccttggcgtgcaggttgcaggatggaccccgtgagctgacagcgt 503

                                                                       
Query: 304 ttaaaaagagcctgtggttgagaactctttcttctggatctgcttgcaaatgtcaggaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaaaaagagcctgtggttgagaactctttcttctggatctgcttgcaaatgtcaggaca 563

                                                                       
Query: 364 ggaagccccaaagaacgggggaaaggaagaaatggagcgagtgttgagagttcatttact 423
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaagccccaaagaacaggggaaaggaagaaatggagcgagtgttgagagttcatttact 623

                                                                       
Query: 424 ctgtggcctgcagcgactgggcttcagctttccctcgtggaagagtcctttgagagggaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtggcctgcagcgactgggcttcagctttccctcgtggaagagtcctttgagagggaa 683

                                                                       
Query: 484 cagcaggaatagtatggctgtagtatctccagtgcaaatgagaaatggaggaaataccat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagcaggaatagtatggctgtagtatctccagtgcaaatgagaaatggaggaaataccat 743

                                                                       
Query: 544 gtatgatagatacatgctgcttctgaggggaggccagcctttttgtcccaacctagggac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtatgatagatacatgctgcttctgaggggaggccagcctttttgtcccaacctagggac 803

                                                                       
Query: 604 ttgactcttatctgaaaaataactccaaacgaccccacccaatttaaagataactcaaag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgactcttatctgaaaaataactccaaacgaccccacccaatttaaagataactcaaag 863

                                           
Query: 664 acatccagatggccccacccaccttattaatt 695
           ||||||||||||||||||||||||||||||||
Sbjct: 864 acatccagatggccccacccaccttattaatt 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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