NNAAATAATTTTTTATTTTNCCACCCCACCCAACCCCCCCCNNNNCCCTC
TATAAATTGCGGCCGCTAANNAGANTCCTATTTCCCGAAAAGANNGNGNN
NNNNNNNNNTTTGCCTTAAAAAAGGGGNNGNNNGANGNNNNNGANNNNNN
GGANNNNNNNNNANNNNNNGGNGNAGGANNNANNGGNNGGAAGGGANNNG
AGGGNNNNAGGNNNGGGGGNNNNAGAGAAGAGNNAGGAAANNNGGGAANG
GGGGANAGNNAAGAAGAANAGAGNNNNGAAGNAGGGGNNNANNNGGAGGA
GGTTTTGAAGGAAATANNAGGGGGGTGTNTATAGTGAGGGGNAGNAGAAG
NAGGGGNGGANAGNNTATTTTTTTTTTGNNGNANNNGNNNGGGNNNGAAN
GNAGNNNNGAGANNNNGGGCCCCCCCCCCCCCGGGGGCACACAGGGACAC
AGAACGGGACGGCAGCCCCCCAGGAAAAGAAACAAAACAAGACACGCGCA
ACGAACGCGAACGAACGCACGCAAGAAAGAGACACACAANCCAGACAAAC
GCCGGAAGGAGGAAGAAGAGACCAGAAACCCCGGAGCCGCCGCAACACAC
AGAAGAGAGCAGCGCGGAGCGAGAAGGAAGCCCGAAGCGAACACACAGGA
ACAAAAAACCCACCAANGAAAAAGGCCGACAAGACGCGAGCGAGCAACAA
GGACACGGCGAGACGAAAGATAGGCGGGCGCCGGCCCGACGGCGGGAGGA
GAGGAAAAGGCAAAAGACGGCCCCCAAAAAAAAGGCAAAACAGCCACCCC
AGGCCAGGAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTTGTGAGCTCTGAGTTGTTCTTTG
TCATTCCTATGACACACACACACACACACACACACACACACACACACACA
CACACTCACACACGGGGACATTTTCAATACATTACCCTCTCAGATACACT
CATAGACTCATTCCTTCTAATTTATCTGCTTAGTCCAGGCTAAGGGGATT
CATTGTTAGAGAACCTCTCACCTTCTGGAGTGAGTGGAGTCTCAGATTGA
CCTACAGACTTAGGGTGGCTGAGCAGGACCGACCAGGGCTCTCTAACATC
AAGATTCTCGTATCTGAGAATGGGAAACAGAGGGGTACATTAGTCATCCA
CAGCTCCGTGCAAAGACCCGCCCTCCAAGAGAAAGGATACGTGGCTTGCC
TCTCTTTCAATTATTTTGTTCCAAAAGTCATGAAAACAATGGGTATAAAG
AGCATTTCATGTTTGCTAATCAATATGAGAGAGAGGCGCGGCCACCAGAG
ACGAGCAAGTGGCCCACCACATCAACCACAGGAACAGAGCAGCACCCTGG
ACCTCAGGAAATTCAAAACCTGAACGTTCCAAGGTAATAAATACAGTGGT
GGTTCCAGGGCTGTGCCTTGAAAGGAATATACGGGTCAAGAGGCTTGTCA
AATGAAGCTCTATCGAATCGCAGATAAC

Query= MSMg01no167_h04.g1 MSMg01no167_h04.g1 CHROMAT_FILE:
MSMg01no167_h04.g1 PHD_FILE: MSMg01no167_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:12 2005
         (562 letters)



>mm_chr9_99702672_99703631
          Length = 960

 Score =  884 bits (457), Expect = 0.0
 Identities = 523/563 (92%), Gaps = 30/563 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttgtgagctctgagttgttctttgtcattcctatgacacacacacacacacacacac 60
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 824 tctttgtgagctctgagttgttctttgtcattcctatg---------------------- 787

                                                                       
Query: 61  acacacacacacacacacacactcacacacggggacattttcaatacattaccctctcag 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ----acacacacacacacacactcacacacggggacattttcaatacattaccctctcag 731

                                                                       
Query: 121 atacactcatagactcattccttctaatttatctgcttagtccaggctaaggggattcat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 730 atacactcatagacacattccttctaatttatctgcttagtccaggctaagggaattcat 671

                                                                       
Query: 181 tgttagagaacctctcaccttctggagtgagtggagtctcagattgacctacagacttag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgttagagaacctctcactttctggagtgagtggagtctcagattgacctacagacttag 611

                                                                       
Query: 241 ggtggctgagcaggaccgaccagggctctctaacatcaagattctcgtatctgagaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 610 ggtggctgagcaggaccgaccagggctctctaacatcaagattctcgtatccgagaatgg 551

                                                                       
Query: 301 gaaaca-gaggggtacattagtcatccacagctccgtgcaaagacccgccctccaagaga 359
           ||||||  |   |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 550 gaaacatta---gtacattagtcatccacagctccgtgcaaagacctgtcctccaagaga 494

                                                                       
Query: 360 aaggatacgtggcttgcctctctttcaattattttgttccaaaagtcatgaaaacaatgg 419
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 493 aaggacacgtggcttgcctctctttcaattattttgttccaaaagtaatgaaaacaatgg 434

                                                                       
Query: 420 gtataaagagcatttcatgtttgctaatcaatatgagagagaggcgcggccaccagagac 479
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 433 gtataaagagcatttcatgtttgctaatcaatatgagagagaggcacggccaccagagac 374

                                                                       
Query: 480 gagcaagtggcccaccacatcaaccacaggaacagagcagcaccctggacctcaggaaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gagcaagtggcccaccacatcaaccacaggaacagagcagcaccctggacctcaggaaat 314

                                  
Query: 540 tcaaaacctgaacgttccaaggt 562
           |||||||||||||||||||||||
Sbjct: 313 tcaaaacctgaacgttccaaggt 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 960
Length adjustment: 10
Effective length of query: 552
Effective length of database: 950
Effective search space:   524400
Effective search space used:   524400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)