BAC Information

Click to search

BAC

Clone NameMSMg01-168D01
Chromosome9 (Build37)
Map Location 40,171,046 - 40,171,309
singlet/doubletsinglet
Overlap geneGramd1b
Upstream geneOlfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b
Downstream geneLOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168D01.T7 (MSMg01no168_d01.b1)MSMg01-168D01.TJ (MSMg01no168_d01.g1)
ACCAG365453AG365454
length713817
length of high quality
(start - end)
313 (47 - 359)235 (137 - 371)
definitionCHROMAT_FILE: MSMg01no168_d01.b1 PHD_FILE: MSMg01no168_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:15 2005CHROMAT_FILE: MSMg01no168_d01.g1 PHD_FILE: MSMg01no168_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGCTGGCTGCTCAGCAAGATCTTTTTATCAAACAAACAAACA
AACACTGACTAAAAGAATGCTTTAAAAATGAATGACTGTCTTTGACCCAT
TTCTTGAAAGGATGACCTAATTACACAGTCTAGCCATTTACCCTTCTGTA
TTTACCCTCTCACCAATAGCAATATCATTTCTTGTCTCTCCATGGTGGCT
GTTGCCTCAGAGGTCACGAGAGACCTAATTATCAAAGGTGAAGGAACGGT
CTCAGTCTTTGGGGAATAAAAAGCATGAGCTGTTGAGAGATCCCACCTTA
ACTCTAGTCTCTCCTATCCCCCACCCGCCCCAACTTGTTACTCGTAATCA
TGTATAGTCCTCTTGACACCCAAAAACAAAAAAATTTGAGAGCCGTTCTC
CAGCGCTGCTGTTAATATCTCGAGCCCGTTTGAATATGAAACACTTCCCA
TGACCCCTGCCTTGCCCTACCCCGCCAAGCACCGCTGATTCCCTCCCTCT
TGTGACTCCCAAAGCCCACGCTCCACCCTTTGCCCCCCATTGTCATTTCG
CCCCCCCTGACACCCCCCCCTATAAGCTCTACTTTTTCCCTCTTATAAAA
TTATCCCTCCCCCCTCATCCCCTCAATTTCCCCCCCCACTCAACCACAAT
CTTTTCTCCTTTC
TTCCTCTCCTCTTTTTCTTTTTTCTACTCCCCCCGGGNNNTTTTTTCGTT
TAAANAAGAACAAAGCATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGGAAGGCGGT
GCGCCAAGTTGAGATAGAAGGCTTATGGCCAGTTATAATGGGTGATGAGT
CAGGACAGTCAGACTGGAGGCCAGACATACAGCAAGGTGTCTGTGTTATA
ACTCCATTCATATGCAAGTAAGTCCCGAACAGGGAACCTTGAGAGACAGA
AAGGGTTATCTACTGAAAAGGAGATAGAGATGCTATTTGAGGGTACAGGA
TTTCTTCTGCGGTTGATGAAGGGTTCTGATGTTGTTTATAGTAAAGGCCC
CAGTTATCTCTGGCCATTTTTGTATTTCCCCAACTGGCCCCCTCCGAATG
AATTTTATAGTAGGTTGGATTTTGCTTTCCTAAAAAAAAAAAAAAAAAGG
ATCTCTGCCTGGCGCGCTTCCTGTGTCTCCCCCCATTGCATAATTCCCAT
CGATGATTAATAAAATCCCCCACGATCCTCGGGCTAGCTGTACCCCGGGC
CGCATTGTGCCTCAGATAGTAAATTCTATTCGCCATACCATGGCCCTTGT
TTCAAAAGTTCCTCTTCTCCTTACACTGCTTTACCCTATTTAACATTAAT
TACTTGCACACCCGCACCCTTGAATTATATATTAAGCTCCCACCGCCGGT
CCACAGCAAGACTAATGCCGCGCCCCGTACCCATTGACCCTTGTTAACTT
TTATTGTTCTCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_d01.g1 MSMg01no168_d01.g1 CHROMAT_FILE:
MSMg01no168_d01.g1 PHD_FILE: MSMg01no168_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:15 2005
         (235 letters)



>mm_chr9_40170875_40171509
          Length = 635

 Score =  329 bits (170), Expect = 1e-94
 Identities = 227/264 (85%), Gaps = 29/264 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggaaggcggtgcgccaagttgagatagaaggcttatggccagttataatgggtgat 60
           |||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 172 tctgggaaggtggtgcgccaagttgagatagaaggcttacggccagttagaatgggtgat 231

                                                                       
Query: 61  gagtcaggacagtcagactggaggccagacatacagcaaggtgtct--gtgtt------- 111
            |||||||||||||||||||||||||||||||||||||||||||||  |||||       
Sbjct: 232 aagtcaggacagtcagactggaggccagacatacagcaaggtgtctctgtgttttccagg 291

                                                                       
Query: 112 --------------------ataactccattcatatgcaagtaagtcccgaacagggaac 151
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggatggacacaaaggcctatataactccattcatatgcaagtaagtcccgaacagggaac 351

                                                                       
Query: 152 cttgagagacagaaagggttatctactgaaaaggagatagagatgctatttgagggtaca 211
           |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||
Sbjct: 352 cttgagagacagaaagggttatctacagaaaaggagatagagatgctagctgagggtaca 411

                                   
Query: 212 ggatttcttctgcggttgatgaag 235
           ||||||||||||||| ||||||||
Sbjct: 412 ggatttcttctgcgggtgatgaag 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)