BAC Information

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BAC

Clone NameMSMg01-168E22
Chromosome9 (Build37)
Map Location 91,007,071 - 91,007,451
singlet/doubletsinglet
Overlap genenone
Upstream geneMorf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneLOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168E22.T7 (MSMg01no168_e22.b1)MSMg01-168E22.TJ (MSMg01no168_e22.g1)
ACCAG365535AG365536
length1,0981,143
length of high quality
(start - end)
401 (44 - 444)379 (72 - 450)
definitionCHROMAT_FILE: MSMg01no168_e22.b1 PHD_FILE: MSMg01no168_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:27 2005CHROMAT_FILE: MSMg01no168_e22.g1 PHD_FILE: MSMg01no168_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAGCTCTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCA
GGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGC
GTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATT
CTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAG
TTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCA
GCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAG
TCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGGT
GTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGTATTTTTTC
CCCCCCCCCCGTTGCTTTGGCCAGTAAAGAGAAAAGATGTCTGGAGTCGA
AGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGG
TTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTCTGCGACTCTCTCG
CCCGTCCCAGAAACAGCTGGCACTCTGTATTCCACACGGTCACCCGTGCA
GCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGCGCCTG
TGCCACAAACCTCTCAGGCCAGGCAGACCCCCGTGCTCTCACCAGGAAGG
TGGCCGGCTGTCTCCTACAGCTTCTTGAGAAAGTTAAATATTAATATATA
ACCACACAATCAAATAAATATTATAATATTGTTTCAACTAAATGCCAAGG
AAATTATGTAATATTGTACAAGTATAAAAACTTACATGGCCCTGAGTTAT
GTGGAAGCCAGAAAGACTTATCTCAGTGGGAGGAGATGTGCCTAATCCTG
TAGAGTTTTTGTGTACTAGGGTAGGGAGATTCCGGGAGGGGGGCCCCCCT
CCTCAAAGGTAAAGGGGGATGGAAAAGAGGAACCCTTCTGTTGAAGGAGT
GGCATTTAACTAACCAAACCAACCATTTAATTTATTTAAAAAGAAAAG
NNGGGGATGAGGGNAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTTATCTCTAGTCATTTTTAAGTGTAAA
AATGTGTCTCAGGGTGTACCACGTGAATGTGTATGTGCCCACAGAGGTCA
GAAGTCATTGTCATATGGACCTTGAGTTCTATATGGTTATCACTCTCATG
ATATAGGTGCTGGGGTCTGAACTTAGTCCATTAGCAGAATAGGAAATGCT
TTTAACCACTGAGCCATTGCTCTAGTCTTCTCTCTCTCTAGTCATTTGGT
ACACAATATAGTTCTAGGTTATCCATTAGAGTCCCATTTGACTTCATGGA
ATGATAAAAGGATATTTGTTGTAAAAAAAAAAGGTGGGGGTGGGGTCTGA
CTGGGCACCCTATGCTTCAGTTTTGTCAGGACAATATTTATGTTAGTTTT
TTTCTCCCCCCCCTAACCAAAGCACCCCTTCCTGCAAAAAAAATGTAAGA
CTTAGGAAATTGTGTAGGAATTGTGTAGTAGGCAAGAATTTGAGGGGAAG
GCCAGCCTGTAGGCAGCTACTTTTGAACAAGTGAGGCTGAACAAGTATCT
TGGTCATTCAGATTGTCAGTAGCATTTAGAATGCATTGTTTCATATAGTT
GTACAAGAGAGCAAAGATGCAGGAAATGGCCAACCAGTGATTGGCCCAAA
TTGAGACCCATCCCATGGGCAAGAAACAATCCCTGACACTATTAATATTA
ATCTATTATGCTTATAAACAGGAACATAGCCTAACTGTCCTCTGACAGGC
TCTATCCAACAGCAGACAGAAACAGATCCAGAGATCCGCAGTCAAATGTT
AGATGAAGTTCTGAGAATCTTGTAAAACAGTTGAGGGTAGGATTGAAAGA
CCCAATGGAGAAAGGGAATCCCCAGGAAGACCAACAAAGTCCACTAACCT
GAACCCTTGGGAACTTGCAAAGACTGAACCACTTACTAAGGTATTGAACA
TGGTCTGAACCTAAGCCCCCCAAACGATATTTAGAAAATGTGCCACCTTG
GTCTTTTTTGCAAATTCCTTCACCAAATGGAAAAAAGGAACTGCCCCCCT
AAATCCTGGGGGTTTGGCCCGGGGAATCCCCTTTTCCCCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_e22.g1 MSMg01no168_e22.g1 CHROMAT_FILE:
MSMg01no168_e22.g1 PHD_FILE: MSMg01no168_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:27 2005
         (379 letters)



>mm_chr9_91006871_91007655
          Length = 785

 Score =  675 bits (349), Expect = 0.0
 Identities = 371/381 (97%), Gaps = 6/381 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatctctagtcatttttaagtgtaaaaatgtgtctcagggtgtaccacgtgaatgtg 60
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 201 ctttatctctagtcatttttaagtgtaaaaatgtctctcagtgtgtaccacgtgaatgtg 260

                                                                       
Query: 61  tatgtgcccacagaggtcagaagtcattgtcatatggaccttgagttctatatggttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtgcccacagaggtcagaagtcattgtcatatggaccttgagttctatatggttatc 320

                                                                       
Query: 121 actctcatgatataggtgctggggtctgaacttagtccattagcagaataggaaatgctt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 actctcatgatataggtgctggggtctgaacttagtcctttagcagaataggaaatgctt 380

                                                                       
Query: 181 ttaaccactgagccattgctctagtcttctctctctctagtcatttggtacacaatatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaccactgagccattgctctagtcttctctctctctagtcatttggtacacaatatag 440

                                                                       
Query: 241 ttctaggttatccattagagtcccatttgacttcatggaatgataaaaggatatttgttg 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttctaggttatccattagagtcccatttgacttcatggaatgatcaaaggatatttgttg 500

                                                                       
Query: 301 taaaaaaaaaa-----ggtggggg-tggggtctgactgggcaccctatgcttcagttttg 354
           |||||||||||     |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaaaaaaaaaaaaggtggggggtggggtctgactgggcaccctatgcttcagttttg 560

                                
Query: 355 tcaggacaatatttatgttag 375
           |||||||||||||||||||||
Sbjct: 561 tcaggacaatatttatgttag 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 785
Length adjustment: 9
Effective length of query: 370
Effective length of database: 776
Effective search space:   287120
Effective search space used:   287120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)