BAC Information

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BAC

Clone NameMSMg01-168F12
Chromosome9 (Build37)
Map Location 98,986,264 - 98,986,564
singlet/doubletsinglet
Overlap genePik3cb
Upstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123
Downstream geneLOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168F12.T7 (MSMg01no168_f12.b1)MSMg01-168F12.TJ (MSMg01no168_f12.g1)
ACCAG365559AG365560
length714713
length of high quality
(start - end)
307 (50 - 356)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no168_f12.b1 PHD_FILE: MSMg01no168_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:30 2005CHROMAT_FILE: MSMg01no168_f12.g1 PHD_FILE: MSMg01no168_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCCTCCACTTTATGCATCTGACCATTGTCTACCCATGTAC
AAATCAATTCCTACTCACTCACCCATCTGTCCACTTATCCTCGTACCTGC
ACACGCCAGACGAGTCATTCCATTGAACTCCAGCCCAACCCTTCTCACCC
CATCTGGGCCAACACTATCCTGATACAAATGAGAGGCACTGCAGGTAAGA
AAGTAAGTCAGTCAGGTAATACATGCTTCTAATTAATGGTGAGGCTGTAA
GAGGTGGGAAGGTTTCTTTTTTTTCCTGTGTTACAGTGTAAGGCTCCTGC
CTGGTCTTTTTTTATTACCCAAACATGTCCCCAGTAGTTTTCATGAGNAA
AAATGAAAACCTACAGACTATAAAAAAAAAATTGTAGCTGGTAGGACACA
TGTTCTTCTCATGCCATACGACTGGGACTGAAACGCTGACTCTCTGGGGT
CTTCAGCCAGACTTCAGATACGATCGTGTTCATGAGTCGTGAACATTGCA
GTTCTCAGCCTTTCTGACTCAGACAAGAACTATACCACTGGGCTCCCTTG
TGTCTCCAGCTTGACAACTTTGCAGATCCTGACGTGCCATTGTATACTTC
CCAAATTTTTCAAGACAGATCCCGCTAGCAACCCGCCTTTTAATCCAGTG
GTGTCCGAAGGATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCGTCCGGGAAGCCCTTGGGTTT
GATTCTTCAACACGGCCTAAGACAGGCGAGCTGACACGTGCCTGTAATTC
CAGAATTTAGGAGGTACAGGCAGATCAGGAGTTCAAGGTCATCCCTGGCT
TTATAGCAAAAGTCAAGACCACCGGAAGCTACAGGAGGCCTTGGCTCAAG
GAAAAAAATAAAACGAAGGTCCTTCTCCACTCTTTTCAAAAACCAAAAGT
GGGTTAAGAAATCCAATATATGTAAGGGAAAAAAAATCATGTTCGCAGNC
TAAAGGTTGAATTTGTGCCCTNAGCAATNCCCCATCGTTGTCCTTGCAAN
TTACAGCCACACGGTGGCGAAATAAACAAAAAGCATTTCCGGAAGGACTT
GGGAAATGCAAGTCCCATCAGGGTCTTAGTGACCCTAATACATCAACTAA
AGTGACTCTCTCTGGGTGGTCCAAGGGCACATCTCTTAAGAGAGTACTGC
TCTCAAGCCCACGTTTAGGCACACAGTGAGTCTAAACTGTGTGTGTTCTC
TGCAAACACATCCCAATCCCTCTATTCCCCCTCATGGCCCCTTCCTTCCC
TTTCTATATCTGGATATTCCCACTACGGAGCTGACAGATTTTCATTTTCA
GCTTCCTAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_f12.b1 MSMg01no168_f12.b1 CHROMAT_FILE:
MSMg01no168_f12.b1 PHD_FILE: MSMg01no168_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:30 2005
         (307 letters)



>mm_chr9_98986060_98986766
          Length = 707

 Score =  530 bits (274), Expect = e-155
 Identities = 294/306 (96%), Gaps = 10/306 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccctccactttatgcatctgaccattgtctacccatgtacaaatcaattccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccctccactttatgcatctgaccattgtctacccatgtacaaatcaattccta 264

                                                                       
Query: 65  ctcactcacccatctgtccacttatcctcgtacctgcacacgccagacgagtcattccat 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 ctcactcacccatctgtccacttatcctcgtacctgcacacgccagacaagtcattccat 324

                                                                       
Query: 125 tgaactccagcccaacccttctcaccccatctgggccaacactatcctgatacaaatgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaactccagcccaacccttctcaccccatctgggccaacactatcctgatacaaatgag 384

                                                                       
Query: 185 aggcactgcaggtaagaaagtaagtcagtcaggtaatacatgcttctaattaatggtgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcactgcaggtaagaaagtaagtcagtcaggtaatacatgcttctaattaatggtgag 444

                                                                       
Query: 245 gctgtaagaggtgggaaggtttct-----tttttttcctgtgttacagtgtaaggctcct 299
           ||||||||||||||||||||||||     ||     |||||||||||||||||| |||||
Sbjct: 445 gctgtaagaggtgggaaggtttctgcaagtt-----cctgtgttacagtgtaagactcct 499

                 
Query: 300 gcctgg 305
           ||||||
Sbjct: 500 gcctgg 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)