BAC Information

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BAC

Clone NameMSMg01-168G19
Chromosome9 (Build37)
Map Location 91,007,071 - 91,007,450
singlet/doubletsinglet
Overlap genenone
Upstream geneMorf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneLOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168G19.T7 (MSMg01no168_g19.b1)MSMg01-168G19.TJ (MSMg01no168_g19.g1)
ACCAG365611AG365612
length9941,107
length of high quality
(start - end)
411 (45 - 455)378 (73 - 450)
definitionCHROMAT_FILE: MSMg01no168_g19.b1 PHD_FILE: MSMg01no168_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:39 2005CHROMAT_FILE: MSMg01no168_g19.g1 PHD_FILE: MSMg01no168_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGCTCTGTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCC
AGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGG
CGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGAT
TCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATA
GTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATC
AGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCA
GTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGT
TGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTT
TTTTTTTCCCCCCCCCCTTTGGNCAGGAAGGTGGACAAAAAAAAGGAGTC
GAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCT
GGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTCTGCGACTCTCT
CGCCCGTCCCAGAAACAGCTGGCACTCTGTATTCCACACGGTCACCCGTG
CAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGCGCC
TGTGCCACAAACCTCTCAGGCCAGGCAGACCCCCGTGCTCTCACCATTAA
GGTGGCCGGCTGTCTCCTTCTGCTTCTTGAGAAAGTTTAATATTTATTTA
TTCCTCCCTATCCAATAAATATTATAATATTGTTCCTCTAATTGGCTTTT
TTATTTATGTTCTACGGACCAGTTTTATACCTTTCTTTTCTTTTTCCTTT
TTTTTTTTCTTCTTTTCCCCTCCTCTCTTGGTCCTCTCTCTTTTTCTTTT
TTCCTCTCTTTTTTTTTTTTTCTTCTTTCCTCTTTTTTCTTTTC
NNGGGATGAAGCGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTATCTCTAGTCATTTTTAAGTGTAA
AAATGTGTCTCAGGGTGTACCACGTGAATGTGTATGTGCCCACAGAGGTC
AGAAGTCATTGTCATATGGACCTTGAGTTCTATATGGTTATCACTCTCAT
GATATAGGTGCTGGGGTCTGAACTTAGTCCATTAGCAGAATAGGAAATGC
TTTTAACCACTGAGCCATTGCTCTAGTCTTCTCTCTCTCTAGTCATTTGG
TACACAATATAGTTCTAGGTTATCCATTAGAGTCCCATTTGACTTCATGG
AATGATAAAAGGATATTTGTTGTAAAAAAAAAAGGTGGGGGTGGTTTTTG
ACTGGGCACCCTATGCTTCAGTTTTGTCAGGACAATATTTATGTTATTTT
TTTCCCCCCCCCCCTAACCAAAGCACCCCTTCCTGAAAAGAAAATGTAAG
ACTTAGGAAATTGTGTAGGAATTGTGTAGTAGGCAAGAATTTGAGGGGAA
GGCCAGCCTGTAGGCAGCTACTTTTGAACAAGTGAGGCTGAACAAGTATC
TTGGTCATTCAGATTGTCAGTAGCATTTAGAATGCATTGTTTCATATAGT
TGTACAAGAGAGCAAAGATGCAGGAAATGGCCAACCAGTGATTGGCCCAA
ATTGAGACCCATCCCATGGGCAAGAAACAATCCCTGACACTATTAATATT
AATCTATTATGCTTTATAACAGGAACATAGCCTAACTGTCCTCTGACAGG
CTCTATCCAACAGCAGACAGAAACAGATCCAGAGATCCGCAGTCAATTGT
AAATGAAGTTCTGAAAATCTTGTTAAATATTTAGGCTAAGATTTTAATAC
TATTGAGTTTAGTTGATCTCTTGAATATCATCTATGTTTTTTTTCTTTTC
CTCTTTTTATTGTTTATATTTATTCCTTATTTATTTTTTCATTTTTTTTT
TTTTATCCCTCCTCCTTTTTTTTTATTTTTTTTTTTTTTTTTTTCTTTTT
TCTCTCTCTATTATATATTTCCTTTCTTTATCATTGTTATCTTATGTATC
TTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_g19.g1 MSMg01no168_g19.g1 CHROMAT_FILE:
MSMg01no168_g19.g1 PHD_FILE: MSMg01no168_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:39 2005
         (378 letters)



>mm_chr9_91006871_91007654
          Length = 784

 Score =  650 bits (336), Expect = 0.0
 Identities = 367/380 (96%), Gaps = 6/380 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatctctagtcatttttaagtgtaaaaatgtgtctcagggtgtaccacgtgaatgtg 60
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 201 ctttatctctagtcatttttaagtgtaaaaatgtctctcagtgtgtaccacgtgaatgtg 260

                                                                       
Query: 61  tatgtgcccacagaggtcagaagtcattgtcatatggaccttgagttctatatggttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtgcccacagaggtcagaagtcattgtcatatggaccttgagttctatatggttatc 320

                                                                       
Query: 121 actctcatgatataggtgctggggtctgaacttagtccattagcagaataggaaatgctt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 actctcatgatataggtgctggggtctgaacttagtcctttagcagaataggaaatgctt 380

                                                                       
Query: 181 ttaaccactgagccattgctctagtcttctctctctctagtcatttggtacacaatatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaccactgagccattgctctagtcttctctctctctagtcatttggtacacaatatag 440

                                                                       
Query: 241 ttctaggttatccattagagtcccatttgacttcatggaatgataaaaggatatttgttg 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ttctaggttatccattagagtcccatttgacttcatggaatgatcaaaggatatttgttg 500

                                                                       
Query: 301 taaaaaaaaaa-----ggtggggg-tggtttttgactgggcaccctatgcttcagttttg 354
           |||||||||||     |||||||| |||  | ||||||||||||||||||||||||||||
Sbjct: 501 taaaaaaaaaaaaaaaggtggggggtggggtctgactgggcaccctatgcttcagttttg 560

                               
Query: 355 tcaggacaatatttatgtta 374
           ||||||||||||||||||||
Sbjct: 561 tcaggacaatatttatgtta 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 784
Length adjustment: 9
Effective length of query: 369
Effective length of database: 775
Effective search space:   285975
Effective search space used:   285975
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)