BAC Information

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BAC

Clone NameMSMg01-168L15
Chromosome9 (Build37)
Map Location 121,892,559 - 121,892,734
singlet/doubletsinglet
Overlap geneC85492
Upstream geneUlk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik
Downstream geneLOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168L15.T7 (MSMg01no168_l15.b1)MSMg01-168L15.TJ (MSMg01no168_l15.g1)
ACCAG365816AG365817
length741762
length of high quality
(start - end)
269 (44 - 312)176 (78 - 253)
definitionCHROMAT_FILE: MSMg01no168_l15.b1 PHD_FILE: MSMg01no168_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:09 2005CHROMAT_FILE: MSMg01no168_l15.g1 PHD_FILE: MSMg01no168_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTTAT
TACCGCCATTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTT
CTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAGTTCT
GGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCGA
GTTTTCTCACCCCGGGTTTTTTTCTTCCCGGATTTTCTCGTCCCGGATTT
TCTCGTCCCGGTTTCTTTTTTTTACTCTTGCACGCTTTCTCACGATTAGC
CATTTAGATCAGTTCCCCGGAGCATTTCCCGCTTTTTATTTTTATTGTTT
ATATCTTGTGGCCCCCCACAAAAAAAAAAAATAGCCCTGTTGTGGAGGGT
CGCTCACTCCCCCTTTATTTTCTTATTTTATTTCTATTTTCTTGTTGTTT
CCCCAGCGTTCCACATCGCCACATTCACGTCCCTATCCCCGAATTTTTCC
CCGCATTACCTATCCCCTTTTCCAATCACGTTTTCCCCTCCTGATTATAC
CCTTACTCAGACGATTTCATTTCTCCCCCCCCTTTCCACCCTTAATTTTT
AGTCTCCCCCCCCATTATCTCTTCGTATTTTTCCTCTCCCTTTATTTCGC
CTTTTTTATCCTCTCTTTTTTTTCCCCTCCCTTCTCCTTTC
NATGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGCCTCATTGGAGTAGCAGA
GCCACTTGAAGCGGCAGATGCGGTCCGTGTGGNTGCGGCCTGGGCACACC
ATGTGGGTGCCGCCCTCCATGAGGATCTGCAGGGCCTTCGGGTAGTCGAT
CTTCAGTCCTAGGACTGGATCCAGGGACTGCTGTCCAAGGGCCAGCTCCT
CCTCTGGGNNNCCGCATGCTCCCCCANCCGCACATGCTTTCACAGNACCG
CANCCAGCACTGATACCAGTTTTTTTTTGAATACCGCCAAAAAGNGCAAC
CAACGGCTTTANAGTGGCTTTCGGAACANAAACCCTTNTTTTTTTTTGTT
TATATTNGGGGGNGTTTTTCGCCCCCACAAAAACAAAAAAAAAAANNNGT
AGGGCGCGGGAAATTTTTTGTTAAGGCCACTTATAAGCNNNTCGCATAAT
GGGGGGGGGGGGGGGGGGGGTCTTGAAANNNNNNNNNNAGGATGGGGGGG
GCGCAGCTTGGGGGNNANANNNATTGGNNNNNNNNANNNNNNNNACCCNN
ATATATTTATTAAACTCCAATTATNTCCTATACATAACTTTATTATTTTA
TTTTCTCTTCCCCCACCTACTTAATAGAGGTGTGGGGCCCACCTCTACAC
ATATCATTCATTTCCTTCTCCCCCTTCCATTCACCCCTTTTATTTTTTTT
TATGGTCGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_l15.g1 MSMg01no168_l15.g1 CHROMAT_FILE:
MSMg01no168_l15.g1 PHD_FILE: MSMg01no168_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:10 2005
         (176 letters)



>mm_chr9_121892359_121892934
          Length = 576

 Score =  327 bits (169), Expect = 3e-94
 Identities = 174/176 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcggcctcattggagtagcagagccacttgaagcggcagatgcggtccgtgtggntgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttcggcctcattggagtagcagagccacttgaagcggcagatgcggtccgtgtgggtgcg 260

                                                                       
Query: 61  gcctgggcacaccatgtgggtgccgccctccatgaggatctgcagggccttcgggtagtc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgtgcacaccatgtgggtgccgccctccatgaggatctgcagggccttcgggtagtc 320

                                                                   
Query: 121 gatcttcagtcctaggactggatccagggactgctgtccaagggccagctcctcct 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcttcagtcctaggactggatccagggactgctgtccaagggccagctcctcct 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)