CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAGAATTATCAGGAAGATTTTTGAAAACATTTCAGGAAACAGG
GAGGAGAAGTGAACGTGAGTAAGGGCATTGTGACAGAATGACACGCATGC
GTGAAATGACCATCACCAAACCATTACTCTTTATGATAATTAATAATGAA
ACAATAAAACAAAGAGTGGTGCCCTCATGGAGCCAGGGCTTGCTGGTCAG
CAGATGCCCCTCTGCACTGATGCTTGTGAGGCAGGGGAGGACTTGGGGAC
AAGGGGAGCCGTGTATCCTGAGTTGCACAGACTGTAAGTAGCAGGCACTC
CTGATTGTTTGCCTCCNNCCCTGCCCGTTTATTTCTGGCTGAGAAGGGAG
CGGCTGCCCTTTCCTCCCAGACAACTCCTTACCATGCAGTAAGAAGTGGT
CGGGAAATTCCACACTGCAGGCATGTGGTAGCATCAAATATGACTTAAAG
TTTGATTTATCAGACATTGGTACAACAATGTCAACTTGTTTTCAAATCTT
ATTGACTGCAGAGAAGCATAAAAGGCCTCCTCCGTTTTGGATTCAGAATG
CGCGGGACACAGTACGGCCCATCTGGGACTTAGCTTAGGCAATTTATATG
TTGTTCTAAATGTTTCTCGATCTGTGTAATCGGATAACAAAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGGCAAAATACTTATACTTTGTGG
TGTGGACAGTAGAGAAGGAACATGATCTCTGGAGAGATTATAGAAAATAT
TTCTTTGAATATTTAGTGAGTAAGGAATGCTGACAACACACTGCATTTGA
ATAAGCAGCACTCTGGCTTTAAGCAAATGCACAGAATTCAATGTCTCATG
CTCCGTTCTTCAAAGGACATTTCACAAGTTATCTGATCTGATGCTCACTG
ACAGGGCCCATCAGATGCTTGGTAGAACGAAACGTTCAGAAGAATTTCAC
AAGGTGAGTAAACTTGTATCTCAGAGTTCCCCCCCCCCTGCTATTTTCAG
CTTGCTCCTTGTTCTATTGGGAACTGATATTGAAGGGTTTAAGTGTTTAC
ATAATGTGCCTGAAGGCTGTAGGCAGAAAGATTGGCATGATCGCCACACC
TACACCCACCATGAGATAGGACGCCTGTGGGATAATTGAGCTAGACCTAA
ATTTAATTTTTTTCTTTTTCTTTTTCAAACCATGATCTCACAAAGCCAAG
GCCGAGCTCATACTCAATGGAGTCTAAGCAAGTCTTGGACTCCTGCACCT
CCTTGCCAATTATTAGGATTATAAAGGTGGGGCTTCCATAGCTAGCTTCT
AAATTTXXXXXXXXXXXXXXXXXXACACN

Query= MSMg01no169_a13.b1 MSMg01no169_a13.b1 CHROMAT_FILE:
MSMg01no169_a13.b1 PHD_FILE: MSMg01no169_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:38 2005
         (305 letters)



>mm_chr9_112178130_112178834
          Length = 705

 Score =  464 bits (240), Expect = e-135
 Identities = 285/300 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagagaattatcaggaagatttttgaaaacatttcaggaaacagggaggagaag 64
           |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 205 gaattccagagaatcatcaggaagttttttgaaaatatttcaggaaacagggaggggaag 264

                                                                       
Query: 65  tgaacgtgagtaagggcattgtgacagaatgacacgcatgcgtgaaatgaccatcaccaa 124
           |||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 265 tgaacgtgaggaagggcgttgtggcagaatgacacgcatgcatgaaatgaccatcaccaa 324

                                                                       
Query: 125 accattactctttatgataattaataatgaaacaataaaacaaagagtggtgccctcatg 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accattactctttatgctaattaataatgaaacaataaaacaaagagtggtgccctcatg 384

                                                                       
Query: 185 gagccagggcttgctggtcagcagatgcccctctgcactgatgcttgtgaggcaggggag 244
           |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gagccaggacttgctggttagcagatgcccctctgcactgatgcttgcgaggcaggggag 444

                                                                       
Query: 245 gacttggggacaaggggagccgtgtatcctgagttgcacagactgtaagtagcaggcact 304
           ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct: 445 gacttggggacaaggggagccatgtaccctgagttgcatagactgtaagtagcaggcact 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no169_a13.g1 MSMg01no169_a13.g1 CHROMAT_FILE:
MSMg01no169_a13.g1 PHD_FILE: MSMg01no169_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:38 2005
         (294 letters)



>mm_chr9_112200922_112201615
          Length = 694

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggcaaaatacttatactttgtggtgtggacagtagagaaggaacatgatctctggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgaggcaaaatacttatactttgtggtgtggacagtagagaaggaacatgatctctggag 433

                                                                       
Query: 61  agattatagaaaatatttctttgaatatttagtgagtaaggaatgctgacaacacactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agattatagaaaatatttctttgaatatttagtgagtaaggaatgctgacaacacactgc 373

                                                                       
Query: 121 atttgaataagcagcactctggctttaagcaaatgcacagaattcaatgtctcatgctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atttgaataagcagcactctggctttaagcaaatgcacagaattcaatgtctcatgctcc 313

                                                                       
Query: 181 gttcttcaaaggacatttcacaagttatctgatctgatgctcactgacagggcccatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gttcttcaaaggacatttcacaagttatctgatctgatgctcactgacagggcccatcag 253

                                                               
Query: 241 atgcttggtagaacgaaacgttcagaagaatttcacaaggtgagtaaacttg 292
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 atgcttggcagaacgaaacgttcaaaagaatttcacaaggtgagtaaacttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)