BAC Information

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BAC

Clone NameMSMg01-169C02
Chromosome9 (Build37)
Map Location 50,840,939 - 50,841,218
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2
Downstream geneLayn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169C02.T7 (MSMg01no169_c02.b1)MSMg01-169C02.TJ (MSMg01no169_c02.g1)
ACCAG366094AG366095
length727694
length of high quality
(start - end)
---280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no169_c02.b1 PHD_FILE: MSMg01no169_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:44 2005CHROMAT_FILE: MSMg01no169_c02.g1 PHD_FILE: MSMg01no169_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCTGAAGAATACCGAATGGTTGAAAACCACCTGAAAAAATGGT
CAACATCCTTAAACATCAGGGAAATGCATATCTGAACAACCCTGAGATTC
CACTTCACTCCAGTCGGAATGCCTAAGATCTGAAACTCAGATGACGGCAA
ATGCTGGCGAGGATGAGCTAGAAAGGCGAACACTCCTCCATTGTTGGTGG
GAATGCAAGCTTGTACAAAAATACCATTTTGCATTAGCCAACAACTCCTG
TACATGCGGACTGCCCTGCAATGCAATGTTCTTAACCGGTAGCAATCGTA
GATAATTTCATGGGATTTTATTTTTATGACCCCCTCACCCAAATCGATGA
ATGTTTTAACAAATATAATCTATGGGACCTAAATCAAGATGAAGAACACG
ATTTATCCTAAGTCATAGCTCACAGTATCATAGACGCCATAATTACTATT
CTCTCAAGCCTGCGCAGAAGAGGTCACCCAGTGGTTTAGAGCACTGGCTG
TTCCGCCAGAAAGTCAGGGGTTGATTCCCACCACCCACATGGACGCTCAC
AGCTGTTCTAATTCCAGGTCCGAGGAACGATGCCCTCTGCTGGACTCGGT
GGGCACCAGGCACACATATGGAATGCATATATACATGAACATGACCATCT
GTACACATACATTCTAACTTAATGTAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGGCAGAGATGGTAGAGATAAAGA
GGACTGTGATGAGTTGAAGATGAGAAATTGGTTCCTTGATTGCTGGAAGA
GTTCCAGGGACCTTCCAAATTTGCCAGAGGTCTAAGACACAGTAGACCCA
CGTGCTATAATACAAACCACTGTCAAGGGCTGGAGTTTTGACATAGTAGG
TCAGAGCGTTGTTATACTTGCCTCTGTATAGTGGAAGGTTCTGTCATCTG
AAGCCTGTTCAAGAACTAGAACTAGAAGGTTTCAGCACCTGGTGTTGCTT
GCTACTTTTAGTTATCCCCCCCCACCCTGTGGTTACAGTAGCTGCCAAGT
GCTAGAGCTCCTGGTGATTAAAGAAAAAAGAGAGAAACCTGCACCCAGGG
TGCCTGTGTCCATGAGTCTCTGTTTGTTAAGACTTGGAGCAATCTCTCTC
TCAGCTTATTCAATGGGTTTTGCCTTGGGCACTCAAGGGTTTGGGGTTGC
CAGCGATAGAAGAGTGTCTCCCCCGACTACCAACTGCTCGTATCAGCATT
AGAAACAACATGAACTCACCTAGACTATTGGCAACAATCTGAGTCACTGT
CTTAGTGTTGCCCTAGGGCCAAACTGCCCTAGATTCAGCACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_c02.g1 MSMg01no169_c02.g1 CHROMAT_FILE:
MSMg01no169_c02.g1 PHD_FILE: MSMg01no169_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:45 2005
         (280 letters)



>mm_chr9_50840739_50841418
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagggcagagatggtagagataaagaggactgtgatgagttgaagatgagaaattggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagggcagagatggtagagataaagaggactgtgatgagttgaagatgagaaattggttc 260

                                                                       
Query: 61  cttgattgctggaagagttccagggaccttccaaatttgccagaggtctaagacacagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cttgattgctggaagagttccagggaccttccaaatttgccagaggtctaagacacacta 320

                                                                       
Query: 121 gacccacgtgctataatacaaaccactgtcaagggctggagttttgacatagtaggtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacccacgtgctataatacaaaccactgtcaagggctggagttttgacatagtaggtcag 380

                                                                       
Query: 181 agcgttgttatacttgcctctgtatagtggaaggttctgtcatctgaagcctgttcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcgttgttatacttgcctctgtatagtggaaggttctgtcatctgaagcctgttcaaga 440

                                                   
Query: 241 actagaactagaaggtttcagcacctggtgttgcttgcta 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actagaactagaaggtttcagcacctggtgttgcttgcta 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)