TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGGCATCCCAGACTGAGAAATGAGAAACGGATACACAGCTGCG
AAGGTACCTTCCCACCCCTGTAAGTCTGTGTCCCTTTTAGGCAGTTTTCA
TACACCTTGCTGAGCAGCACTGAGGCTGCGTAGCCGCTAGCTGGGGTACA
CAGCCACACAGTCCTCTGCCTCTTTGTTCAGTGTCTAACTTCCTTTTGTC
AAAAAGCAGCCTTTGAAATTGCAAGGCAGAGCAGGGGCTGAACTTGCTTT
AAAGCTGCCTGTAGACATCAGGAATATTTATTTTCTCTATTTGTTTTAAG
CCTGGGAATACTGTGTGGCTCCCTCAACACTGTCCTGATGGGGCCCTGAC
CAGCAAGCGTGCAATGCCCTACNNCCTAATGTGCCATTAATGATAAGTTA
ATGTACAGTATAATGTTTTTGGGGACTATGGNTTCCTTACACTCGGNATT
GTGAAGGCTTTTCCCCAGAGCGCCCCAAGGCCCCCTTTGGTTTATCTGNT
GGCATAAAAAATACTTCACCCNNNCCAAAAGGGNNNNNNNNNNGGATTTA
AAGGGNNNNNGCAAGCCGCGCTGTGGCCCTTTAANNNNNNTAGGGGGAGA
GCCTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNTNTTTTTT
TTTTTTTTNNAGCAAAAAAAGAAAAAAAANNNNNNNTTTTTAAAAAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGCGTGTTACTCTTGGTAGTTAGCT
TCCTCCTCAGCCACCCATAGCCACAGCCACATTGAGTGCTGTTTTGATGC
TGGGCTGGCAGCCAGCTCCAGAACAGGAGAGGACTAGACCACGACCTGAG
GTCTGGGGTCCAGACCTTGCCATGGAGCTTGGTGTGGGCACCTCTGAGCC
CTGATTTCTCAGGACACCTGACCTGTGGCATGGGCCTTAGTACTGAGCTA
CAGAAAATGACAGCATCTTGCCGGTGTCCCTGCTTAGTGGGGATATGTAC
TACAGACTTGCTGAGACAAACGCCATCCAAAGCAATAATACTTTTATTCC
CATCAGTGCTGCTGATAGGGCCTGACCCTTTACAATGAACAGTAGGGAAA
GATAAGGGGGTGGGGCCAGAGGAAGTTCCATAGTTTTATAACCTCATCAC
CCCGCCCTGCACCATCTCCACCTGCTATAGTCAGTGCCCACTTCCCCCGC
TCAGCAGAGGCTGGCCCTCTGGAGGGCTTCCTAGGTAGGGCAGGAGGTGC
GAGCAGGAGGCTGGGCCAGTACAGCAGACAGAGGGGTCACGGCTTGCTGT
GTCATGATGACTGGTCCTCAGTGGTCAGTGTCCTGCTGAGGTCTCACGGG
GGTCCCTGCTGGCTC

Query= MSMg01no169_e05.b1 MSMg01no169_e05.b1 CHROMAT_FILE:
MSMg01no169_e05.b1 PHD_FILE: MSMg01no169_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:54 2005
         (312 letters)



>mm_chr9_63022522_63023233
          Length = 712

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttggcatcccagactgagaaatgagaaacggatacacagctgcgaaggtacct 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 512 gaattccttggcatcccagactgagaaatgagaaatggatacacagctgcgaaggcacct 453

                                                                       
Query: 65  tcccacccctgtaagtctgtgtcccttttaggcagttttcatacaccttgctgagcagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcccacccctgtaagtctgtgtcccttttaggcagttttcatacaccttgctgagcagca 393

                                                                       
Query: 125 ctgaggctgcgtagccgctagctggggtacacagccacacagtcctctgcctctttgttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgaggctgcgtagccgctagctggggtacacagccacacagtcctctgcctctttgttc 333

                                                                       
Query: 185 agtgtctaacttccttttgtcaaaaagcagcctttgaaattgcaaggcagagcaggggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agtgtctaacttccttttgtcaaaaagcagcctttgaaattgcaaggcagagcaggggct 273

                                                                       
Query: 245 gaacttgctttaaagctgcctgtagacatcaggaatatttattttctctatttgttttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaacttgctttaaagctgcctgtagacatcaggaatatttattttctctatttgttttaa 213

                   
Query: 305 gcctggga 312
           ||||||||
Sbjct: 212 gcctggga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no169_e05.g1 MSMg01no169_e05.g1 CHROMAT_FILE:
MSMg01no169_e05.g1 PHD_FILE: MSMg01no169_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:54 2005
         (641 letters)



>mm_chr9_63011074_63012114
          Length = 1041

 Score = 1185 bits (613), Expect = 0.0
 Identities = 634/641 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcgtgttactcttggtagttagcttcctcctcagccacccatagccacagccacattg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ctgcttgttactcttggtagttagcttcctcctcagccacccatagccacagccacagtg 260

                                                                       
Query: 61  agtgctgttttgatgctgggctggcagccagctccagaacaggagaggactagaccacga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgctgttttgatgctgggctggcagccagctccagaacaggagaggactagaccacga 320

                                                                       
Query: 121 cctgaggtctggggtccagaccttgccatggagcttggtgtgggcacctctgagccctga 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgaggtttggggtccagaccttgccatggagcttggtgtgggcacctctgagccctga 380

                                                                       
Query: 181 tttctcaggacacctgacctgtggcatgggccttagtactgagctacagaaaatgacagc 240
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctcaggacacctgagctgtggcgtgggccttagtactgagctacagaaaatgacagc 440

                                                                       
Query: 241 atcttgccggtgtccctgcttagtggggatatgtactacagacttgctgagacaaacgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcttgccggtgtccctgcttagtggggatatgtactacagacttgctgagacaaacgcc 500

                                                                       
Query: 301 atccaaagcaataatacttttattcccatcagtgctgctgatagggcctgaccctttaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccaaagcaataatacttttattcccatcagtgctgctgatagggcctgaccctttaca 560

                                                                       
Query: 361 atgaacagtagggaaagataagggggtggggccagaggaagttccatagttttataacct 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 atgaacagtagggaaagataagggggtggggccagaggaggttccatagttttataacct 620

                                                                       
Query: 421 catcaccccgccctgcaccatctccacctgctatagtcagtgcccacttcccccgctcag 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 catcaccccgccctgcaccatctccacctgctgtagtcagtgcccacttcccccgctcag 680

                                                                       
Query: 481 cagaggctggccctctggagggcttcctaggtagggcaggaggtgcgagcaggaggctgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaggctggccctctggagggcttcctaggtagggcaggaggtgcgagcaggaggctgg 740

                                                                       
Query: 541 gccagtacagcagacagaggggtcacggcttgctgtgtcatgatgactggtcctcagtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gccagtacagcagacagaggggtcacggcttgctgtgtcatgatgactggtcctcagtgg 800

                                                    
Query: 601 tcagtgtcctgctgaggtctcacgggggtccctgctggctc 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcagtgtcctgctgaggtctcacgggggtccctgctggctc 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)