BAC Information

Click to search

BAC

Clone NameMSMg01-169E10
Chromosome9 (Build37)
Map Location 55,883,911 - 55,884,225
singlet/doubletsinglet
Overlap genenone
Upstream geneChrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005
Downstream geneRcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169E10.T7 (MSMg01no169_e10.b1)MSMg01-169E10.TJ (MSMg01no169_e10.g1)
ACCAG366196AG366197
length717786
length of high quality
(start - end)
320 (46 - 365)50 (58 - 107)
definitionCHROMAT_FILE: MSMg01no169_e10.b1 PHD_FILE: MSMg01no169_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:55 2005CHROMAT_FILE: MSMg01no169_e10.g1 PHD_FILE: MSMg01no169_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGTTATGGTGGAGTCATAGAGGATGGCAGAACATACTTAAGC
GGTAGGTGTATATGATGCTCAGAAAGTAGGTTCATTTCTAAGAGTATCTA
AAGGAGTATAAGGACCCATAAAAATCACAATAACCCATTAGAAATACTTC
AAAGAAATTCAAAGCAATAGTCTTGCACTAAATAAAAATTTCCCCTAAAT
TAAACACAGATCTGTCCCAATAGTCAAATGTAATGATAGCTTCTTCCCCT
ATTTCTGGCAATTCACATTTATGGTCCCCGGCCACTTTCACTGGTCCATC
TTTGGCTCTAAAGTTTGTTTTAATTACCCCCCCCCCCCCACCTTGTTCCC
TATAGCCATAGGGTATCCACACATCCCAGCAGACCTGATATTATTAATCA
TGCAGCTTACACACTCAAAAATAGCTCAGAAGGTATAGTATTTGGAAGAA
GATAAAGTGTATGGTAGTCATAATTGTGAGCCTTATATTCAAGCTATCTA
GCTCCCTCCCTAGGCTTCTCCCTTTATCCCTGTGCTTTTATTAAGCCCCA
AGAATCTAATCGTATAGCTTTTAAACACAGGTGCTTGAAGCTTTAGTTAA
TATAATTAGCAGGAAAATAGGTAATAAAGAAGGGGGTAGAAGATGACTAA
AGATGGCAATAAGAGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTTTGTTTTTTGTTTTGTTTTTTTTTTGTTGTTGTTGTTTT
GTTTGTTTGTGGTTTCTCAAGACAGGGTTCCTCAGTATATACGTGTTTGC
CCCGCAACTCATTTTGTATACCACGCTGGTCTCGAATTCTTAAATCCGCC
TGCCTCTGTTTTTCTATTGCTGGTACCATTGGTTTGTTTCTCTCCCTCCG
CATTATAATTATGATCGATTATTAATTTTTTGTTTCACTTACACATAATA
TTTTTTTTTTACCCGACAAAAAAAGAAGGACAAAAGAGAATTTAGAGTGA
GTTCCCCAAAGCAGACCCCCTGTGATTGTTAATATGTGGTGGGTGGTGGT
TTTTTTTCTCCCAAAATCCTATTCAAAAAAATTTGTGGGGGGGGGGGGGT
AGACCCCATAATTCATATATACTTTATATCCCCCATCTTAATCCATAAAA
ACACAATATTTATATTTGTCACCCCATATTTTTTATCCCTCCCCAACCAA
TATATCTAATATCCATCTCGTCAGTAATATTCGATATCCGCAAAATATCT
TCCCCATCTTATTTATCTATTAATTTCCCCTATGTTTTTTAATCTTGTCC
TTTTTCCAATTTGACACACACCGCTAATCCCGACCTATATTTCTAATAAA
ACCATAACAAAACAATGAATTATAACACAATTATACATTATCTATTATTA
CATAAATTCAACCCCTCCTTAATATCAATTTTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_e10.b1 MSMg01no169_e10.b1 CHROMAT_FILE:
MSMg01no169_e10.b1 PHD_FILE: MSMg01no169_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:55 2005
         (320 letters)



>mm_chr9_55883708_55884426
          Length = 719

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagggttatggtggagtcatagaggatggcagaacatacttaagcggtaggtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattccagggttatggtggagtcatagaggatggcagaacatacttaagcggtaggtg 459

                                                                       
Query: 64  tatatgatgctcagaaagtaggttcatttctaagagtatctaaaggagtataaggaccca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tatatgatgctcagaaagtaggttcatttctaagagtatctaaaggagtataaggaccca 399

                                                                       
Query: 124 taaaaatcacaataacccattagaaatacttcaaagaaattcaaagcaatagtcttgcac 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 398 taaaaatcacaataacccattagaaatacttcaaagaaattcaaagcaatag-cttgcac 340

                                                                       
Query: 184 taaataaaaatttcccctaaattaaacacagatctgtcccaatagtcaaatgtaatgata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taaataaaaatttcccctaaattaaacacagatctgtcccaatagtcaaatgtaatgata 280

                                                                       
Query: 244 gcttcttcccctatttctggcaattcacatttatggtccccggccactttcactggtcca 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 279 gcttcttcccctatttctggcaattcatatttatggtccccggccactttcactggtcca 220

                           
Query: 304 tctttggctctaaagt 319
           ||||||||||||||||
Sbjct: 219 tctttggctctaaagt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)