BAC Information

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BAC

Clone NameMSMg01-169K11
Chromosome9 (Build37)
Map Location 112,201,130 - 112,201,413
singlet/doubletsinglet
Overlap geneLOC620760
Upstream geneLba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341
Downstream geneLOC100043800, EG622110, LOC100039391, LOC100043801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169K11.T7 (MSMg01no169_k11.b1)MSMg01-169K11.TJ (MSMg01no169_k11.g1)
ACCAG366463AG366464
length1,011682
length of high quality
(start - end)
---284 (58 - 341)
definitionCHROMAT_FILE: MSMg01no169_k11.b1 PHD_FILE: MSMg01no169_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:24 2005CHROMAT_FILE: MSMg01no169_k11.g1 PHD_FILE: MSMg01no169_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTNCTCTTTTTTTNTTATTTTTTTTTCGGGGGGGGGGAAAATTATT
TNTATATTAANNTNTTAAGATATTAAGTTATAGGGAATCGGTTAAATAGT
GTTTTATACCCCCCACCAACTATTTGGTGGTCTTTTTTATATTAATCTTT
TTATTGTTTTATATTTATTAAAGATAGAGTTAAGTGATTATGGGGGTTTA
TAATTATTTCTCCGATGTTTTTTTTTTTTATTGGTAGTAAGTAAAACCAC
TTAAATATAATTATATAATATTATAAAAAAAAAAACGAAAACGCTATAGA
TTAAAAAAAAAAAATTATATGAAAGAAAGGATAAAATTATATAAATAAAT
ATTAATACCTGAATTTTTTTTTTGTTTGACTTTACTTTTGGTGTGTTTTT
TTTTTGTTGTAAAAATAAAATAAGAGAAGCACCCACAGCGAAGAACGAAT
TTTAGATGAATTTTGGAAGAGGAGAGAGGCAGAAGGAGGAGGANAAAAAA
GTAAAGAGGGTGAGGAAATCAGAAGAGGGCAGAGAAGAAGCCGATGTTGT
TTATTGTGGGGGGGTGTGTGTGGGGGGGNNGGNNNNNAAAAAAAAAAAAA
AAAAAAAAATCTTGGGGGGGGGGGTGGGGGGGGGGTGTNTTTTTTTTNNT
TTTTTNNTTTTTTTTGTTGTTTTTTTGTTGTTTNTGTTTTGTTTTTGTGT
TTTTTGTGATANATGTGGGGGTTTGTTTTTGTTGTTTTTTTTTTGGTGGT
GGTTTGGTATGTGTTATTGGGGGTGTTATATTAATATATAGAAAAAGAAA
AGTATACTCCCGTATTATATTTTTTATTATATATTTCAGCGGAGAGTTTA
TTGTGTTAGTTAATTATCCAGCACGCACGTACATGATAGCGTAAGAAAGC
GAGAGTTTGAGGTTTTGTGATTTATACACTGCCGATATGAAAGGATGAAT
AATAAATTAATGCGGGAGAATAGTAAAGTGATATATATTATATGATATTA
TTTAATACATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGAGGCAAAATACTTATACTTTGTGGTGTGGACAGTAGAGAAG
GAACATGATCTCTGGAGAGATTATAGAAAATATTTCTTTGAATATTTAGT
GAGTAAGGAATGCTGACAACACACTGCATTTGAATAAGCAGCACTCTGGC
TTTAAGCAAATGCACAGAATTCAATGTCTCATGCTCCGTTCTTCAAAGGA
CATTTCACAAGTTATCTGATCTGATGCTCACTGACAGGGCCCATCAGATG
CTTGGCAGAACGAAACGTTCAGAAGAATTTCACAAGGTGAGTATTTTTGT
ATCTCACCGTCTGCCCCAGGCTGCTATTTTCAGCTTGCTCCTTGTTCTAT
TGGGAACTGATATTGAAGGGTTTAAGTGTTTACATAATGTGCCTGAAGGC
TGTAGGCAGAAAGATTGGCATGATCGCCACACCTACACCCACCATGAGAT
AGGACGCCTGTGGGATAATTGAGCTAGACCTAAATTTAATTTTTTTCTTT
TTCTTTTTCAAACCATGATCTCACAAAGCCAAGGCCGAGCTCATACTCAA
TGGAGTCTAAGCAAGTCTTGAACTCCTGCACCTCCTTGCCAATTATTAGG
ATTATAAAGGTGTGGCTTCCATAGATAGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_k11.g1 MSMg01no169_k11.g1 CHROMAT_FILE:
MSMg01no169_k11.g1 PHD_FILE: MSMg01no169_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:24 2005
         (284 letters)



>mm_chr9_112200930_112201613
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggcaaaatacttatactttgtggtgtggacagtagagaaggaacatgatctctggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgaggcaaaatacttatactttgtggtgtggacagtagagaaggaacatgatctctggag 425

                                                                       
Query: 61  agattatagaaaatatttctttgaatatttagtgagtaaggaatgctgacaacacactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agattatagaaaatatttctttgaatatttagtgagtaaggaatgctgacaacacactgc 365

                                                                       
Query: 121 atttgaataagcagcactctggctttaagcaaatgcacagaattcaatgtctcatgctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atttgaataagcagcactctggctttaagcaaatgcacagaattcaatgtctcatgctcc 305

                                                                       
Query: 181 gttcttcaaaggacatttcacaagttatctgatctgatgctcactgacagggcccatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttcttcaaaggacatttcacaagttatctgatctgatgctcactgacagggcccatcag 245

                                                       
Query: 241 atgcttggcagaacgaaacgttcagaagaatttcacaaggtgag 284
           |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 244 atgcttggcagaacgaaacgttcaaaagaatttcacaaggtgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)