BAC Information

Click to search

BAC

Clone NameMSMg01-169M23
Chromosome9 (Build37)
Map Location 111,762,870 - 111,763,140
singlet/doubletsinglet
Overlap genenone
Upstream geneTsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169M23.T7 (MSMg01no169_m23.b1)MSMg01-169M23.TJ (MSMg01no169_m23.g1)
ACCAG366567AG366568
length6941,099
length of high quality
(start - end)
249 (431 - 679)---
definitionCHROMAT_FILE: MSMg01no169_m23.b1 PHD_FILE: MSMg01no169_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:36 2005CHROMAT_FILE: MSMg01no169_m23.g1 PHD_FILE: MSMg01no169_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGAAGAGAAGGCATGAGGATCATAGTTCAAATCTAACCACGGATA
TAACACTTTCATACAAAGCGAAGACAAAAAAGAGTCAAGAGCAGTAACTC
AGATGGCAAGTGGTTGCCTCAAAACATGAAGGACTCATTTTAACTGGAAG
AACCCATGGGAAAGAAGCCATCCATGGTGGCCTGTATTTGTAGCCTCAGC
ACAAAAAGATGGACATAGACAGATCCCAATAGACCCTAATCTACTCTATT
TGGCAAGTACCAAGTCATTGATACAAATGAGACAAACGAGAGACCTTGTT
CTACAAATAGATTAACCCANAACAGGCCCCGGAACAGAAAAAAGAAAGAG
AAAATGATAGATATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATAGATAGAGATAGAGAGATAGATAGACAGAGAAATATGGAACAACAC
CCCAAGATGTTCTAGATTCCATGTAACCCTGGGCACAGACATGCACAACC
ACTTATATACTTGTATTAGCACACACAAGCATGCACACACACATATGTGT
ACACAAAAAACATAAAAAGAACTTTTAATATATGTACAAATGTGTGTGAA
CACCAAAATAATTTTTGAACTAAGCCAAAAAGAAGAAAAAACAG
AAAATATAAAAACTATAAGCGTGTGCGCCGGGAATATAAAATAAAAACAT
CAATATAATCCCTATTTAACATCAACAATAAATACANNTCTCCCCTATGA
TAGTGTGTTAGTACTGAGNCGGACGAACTGGAACGTCGGACGTTCTAGGG
TGAACACCATACTATAGGTAACCCGCGGAACTTCCTTTCATAAACGTTGT
GTTTTGAAAACGGGGGTGGAGGGCTGTTATTGTTAATATTATAACCCCCC
AAGGGGGGGGGAAATTGGGGTGTTTTCAAAGGTATAAATGGATTAAAGGC
GAACTTGTGATTTTAAGGGGGAAAAAGTGTGGGCAATGCGGGGAAATGGG
GTGGGAATACGTAATAAAAAATAAACAATACGGGGCAAAATAAGGGAGAC
AGCGGGTAAACTAGAATAATACTTTTGCAAAAAAAAAAGGTGTGAAAAAA
AATGGGAACAAAACGTTCAAACAGGGGAGAAAAGGGGAACAAAAATAAAG
AGATGGGATCGTCAGAAAAAGAACAGGCGTTTTGTGTTTTTGTATTGATA
TATGGCCGCCTCGCAGGTGCGGAGGCACAATCAGGGAGGCGCACTTTTTT
ATTATTTTTTTTTATTACCCCCCCCCACCCCACACCTCCTTTTTTTGGGC
GGGTTTTTTTTTTTTGGTGGGGGGTGTGGTAAATTAGGTGGATTCGGCCA
TAAACGAGCATTACCCAATAAAAACACCTTCTTCGAAACAATGTGGGTTG
GGCGCGAAAAAACATGTGTAAAATTTGCTACACACTAAAAATATTCTACA
AAAGGGGGACATTAACTGGCTATCTACATTTTGAAACACAGGGAATTATA
TAACGTGGTCCGCCAACGGCCAAATAAANAACCCTATATGGTGGGTTAAC
AAACCGGCGTTATTAAATGGGGATAAATAGCGGGGGAAAAGACAAAATGT
GCTTAAATCTACGATATGTGGTAATAAACCAGGCGATTGAAATAGTGTAT
ACCGCGTTTTCTTCAGTGGCAGTTTAACTTATATTCTGTTGTGTGTCTGG
GTACAGCCGCATATATATCTGCAGTGCTCTGTGAATGGTTTAACCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_m23.b1 MSMg01no169_m23.b1 CHROMAT_FILE:
MSMg01no169_m23.b1 PHD_FILE: MSMg01no169_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:36 2005
         (249 letters)



>mm_chr9_111762613_111763263
          Length = 651

 Score =  362 bits (187), Expect = e-104
 Identities = 243/273 (89%), Gaps = 26/273 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatagatagatagatagatagatagatag--agatagaga---gata-gatagacag-- 52
           ||||||||||||||||||||||||||||||  ||| |||||   || | || ||||||  
Sbjct: 528 agatagatagatagatagatagatagatagacagacagagaaagga-agga-agacagaa 471

                                                                       
Query: 53  ag--aaa------------tatggaacaacaccccaagatgttctagattccatgtaacc 98
           ||  |||            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agacaaactggacagcatctatggaacaacaccccaagatgttctagattccatgtaacc 411

                                                                       
Query: 99  ctgggcacagacatgcacaaccacttatatacttgtattagcacacacaagcatgcacac 158
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 410 ctgggcacagatatgcacaaccacttatatacttgtattagcacacacaagaatgtacac 351

                                                                       
Query: 159 acacatatgtgtacacaaaaaa--cataaaaagaacttttaatatatgtacaaatgtgtg 216
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 350 acacatatgtgtacacaaaaaaaacataaaaagaacttttaatatatgtacaaatgtgtg 291

                                            
Query: 217 tgaacaccaaaataatttttgaactaagccaaa 249
           |||||||||||||||||||||||||||||||||
Sbjct: 290 tgaacaccaaaataatttttgaactaagccaaa 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 651
Length adjustment: 9
Effective length of query: 240
Effective length of database: 642
Effective search space:   154080
Effective search space used:   154080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)