BAC Information

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BAC

Clone NameMSMg01-170A10
Chromosome9 (Build37)
Map Location 118,104,387 - 118,104,654
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms3, LOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170A10.T7 (MSMg01no170_a10.b1)MSMg01-170A10.TJ (MSMg01no170_a10.g1)
ACCAG366725AG366726
length719728
length of high quality
(start - end)
314 (45 - 358)271 (78 - 348)
definitionCHROMAT_FILE: MSMg01no170_a10.b1 PHD_FILE: MSMg01no170_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:52 2005CHROMAT_FILE: MSMg01no170_a10.g1 PHD_FILE: MSMg01no170_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGGTGGGCTCCTTTTAGACAATTAATTGTTTTTTTGTTTGTTTGA
GACAGGGTCCTGGAACTCACTTTGTAAAGCTGGCCCTGAACTCAGGGATC
TGCCTGCCTCTGCCTCTGCCTCTGCCTCAGCCTCTGCCTCTGCCTCTGCC
TCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCC
TCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTC
TGCCTCTGCCTCTGCCTGCCTCTGCCTCTGCCTCTGCCTCTCTGCCTCTG
CCTCTGCTTTTTCTGTTTGCCCGGACCANAGCCCTGTATTATCATGCCTG
GCTTTAGGTGNTCTTTACTTCAAAAAAAAAAAAAACCAGCACCAGAGTGA
TACTCACTTTTGCCATCTCACTGTTAAATCGTTTGGCTAGTTGTACTAAC
CTAAACCAATCCTCTGTGGCCCTGTCGCCCGCAGCATCCTCGATCTGACC
TCTGACACAGACATTGGGTAACTATCCCTCAGTTCCACATTCTATTCATC
TCTCCCATCTGTTTGGTGTCTGTCTTACAGTGTTACGTCTAATTCTTACA
CTCTCATCGCTCCTATTCACCAACGAAATTATTTTCTTTTCGTCGCACCC
CTACTTTTTTTCTTCCTCT
GTGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTAAGCCCATTAACCTGTC
ATTCTGTGTTTGTAATCAGCATCACACTCCTGAGCATATTTCAAGTTTTA
TTTTTAGTAATTAGCCTGAATTATTTTCAAGTCAGTCTTAGGTACCATTT
TTATTTCCCCTACATATACTTCAAAATAGATCTTTAATAGACAACTTTGG
GGCTGAAAAGATGGCTCGGGGTTGAGATCATTCAGGGTTCTTGTGGAGAG
CCAGATGTTGGTTCCCAGTACTCATGTCAGGAAGCTCCAAACCACCTGCT
GGGAATTTTAGTTTTTGGGAACCCCCCCCACTTCTGCCCTCTTTAAGTAC
CCACACAGAGATATGCATACAAAAAAGAAAATACACATACGCGTGGGTTT
AAGGTAAAAGATAAAATATATAAGAGAATTTTTTATTAGGGTATATGATA
CAAAGTACTGAGTTTCAGTTTTCATTGGCATTTTTATACCTGCGTGTAAT
GCCATCCTTCTGTTATCTTTTCTTTTATACCCCCGTGTAAGGCCCCCCTT
TCGGTTACCACCTCGTATCTCTAGTTTCTCTCTCATCAAGACTTTCATGT
CTCTAATATTCTCCCTTTAACTTCCATAGCCTTTAGAATTCTCCTTTTAC
CTGTAATCAACTTACCCCGACTGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_a10.g1 MSMg01no170_a10.g1 CHROMAT_FILE:
MSMg01no170_a10.g1 PHD_FILE: MSMg01no170_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:52 2005
         (271 letters)



>mm_chr9_118104187_118104857
          Length = 671

 Score =  495 bits (256), Expect = e-144
 Identities = 265/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagtaagcccattaacctgtcattctgtgtttgtaatcagcatcacactcctgagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagtaagcccattaacctgtcattctgtgtttgtaatcagcatcacactcctgagcat 260

                                                                       
Query: 61  atttcaagttttatttttagtaattagcctgaattattttcaagtcagtcttaggtacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcaagttttatttttagtaattagcctgaattattttcaagtcagtcttaggtacca 320

                                                                       
Query: 121 tttttatttcccctacatatacttcaaaatagatctttaatagacaactttggggctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttatttcccctacatatacttcaaaatagatctttaatagacaactttggggctgaa 380

                                                                       
Query: 181 aagatggctcggggttgagatcattcagggttcttgtggagagccagatgttggttccca 240
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gagatggctcggggttgagatcattcagtgttcttgtggagagccagatgttggttccca 440

                                       
Query: 241 gtactcatgtcaggaagctccaaaccac 268
           | ||||||||||||||||||||||||||
Sbjct: 441 gcactcatgtcaggaagctccaaaccac 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)