BAC Information

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BAC

Clone NameMSMg01-170H08
Chromosome9 (Build37)
Map Location 85,949,880 - 85,950,189
singlet/doubletsinglet
Overlap genenone
Upstream geneBC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
Downstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170H08.T7 (MSMg01no170_h08.b1)MSMg01-170H08.TJ (MSMg01no170_h08.g1)
ACCAG367017AG367018
length699719
length of high quality
(start - end)
309 (36 - 344)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no170_h08.b1 PHD_FILE: MSMg01no170_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:25 2005CHROMAT_FILE: MSMg01no170_h08.g1 PHD_FILE: MSMg01no170_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCCA
ATAAATCTGACTGTTCTTAACTCTCTTTCCTTAAGTCACCCTCCACAGTT
GGGCAGGCGAACGTTTCATATTCTTTCTTAAGATGATTGTTCCTCTGCAA
TCATCATCTGTATGTGTTCTTTTAACTAAATTCAGTATCCTATTGTTACC
AGCACTTCTCTTCTACTGGTCCATTTAATCCATTACACCATATTGAATCA
GTTACACTCCGCCTTCTGTTGAATTTCAGTTTCAGTCTGTAACATTTTTT
TTTGTTTTGTCCCTTACTCTGTGAGAAAACACAGCTAGCTCTATGTTTAG
TTTATTACNAGNACGATNTCATTCCCTCATGACAGGGTAACACTTGCTAA
CCCAGGATGAAAAAAACAAGAAAGGCAAAACAGAGTTGAGGACTCTACCA
CAGTACAGAAGCTTCCTGTGAGGACAGACAAAGAAGCCATGAGCCAAGAC
AGGAAGTGTCTAAAAACTGGTAAAGGTAAGAGAAAATAATTTTATTTGCA
GCTTCCTGAAAGAAGAAAACTTTATCAACAGACTGATCTTGGCTTCTAGA
GTTATATGGCTTGTATTCCAGAATACCCCATAAGATGTCAATAAAGTCAG
ATGCATATATTTGCACCCAACCATTGGACAGATGCATATGACCCCTGTG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTCCAAATCACTCCAGTTTG
TGTCAAGTTGACAAAAAACAAACCAACCAACCAACCTGAAAACAAAACAA
AACAGAAAAAGCCTAATAAGTACAGGGTTATTTCAGAAATTGCTAGAAAT
TCTGTCCTATTCAGAGCTAAAATTAATTTAATAGTTTAAAAATAAAACTC
AAATCAATAATCCAAGCAATAATTTTTAAAATCAAATATTCTAGAACACT
AAAATCCAAAAATATACTAACTTGATATTTACATAGGATAGTGGTAGCAA
AACTCTAAACATATTTGTTTGCCACCACCACACCCCATTCTGTTCTATAT
AATCAAAAACCTGTGTGATATTAAAAATTCTGCAATTCATAGAGATGCCC
AACTTCAATTCATAGAAATACCCAATATATTTTAGCAGTAGTTGTTAGCT
TTGCACAGGTTGATAGCGTATGCCTTGCAAAGTGCCTCTGTTGCAGGTTC
AGAACCAAGGCTGTCGGGAAGGTTCATGATAGAACATAGACAAGCACTCC
CTCAAGTATCTGGGACTCATCACATATTTGATTTTGTATTAATATTAGGT
AACTGTACATTCATAAACCTTTCACTCTTACCAATGTTTTCATGACCCCA
CATCCGGTTATATGACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_h08.b1 MSMg01no170_h08.b1 CHROMAT_FILE:
MSMg01no170_h08.b1 PHD_FILE: MSMg01no170_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:25 2005
         (309 letters)



>mm_chr9_85949676_85950389
          Length = 714

 Score =  522 bits (270), Expect = e-153
 Identities = 298/310 (96%), Gaps = 5/310 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccaataaatctgactgttcttaactctctttccttaagtcaccctccacagt 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccaataaatctggctgttcttaactctctttccttaagtcaccctccacagt 264

                                                                       
Query: 65  tgggcaggcgaacgtttcatattctttcttaagatgattgttcctctgcaatcatcatct 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 265 tgggcaggcgaacgtttcatattctttcttaagatgattgttcctctgcagtcatcacct 324

                                                                       
Query: 125 gtatgtgttcttttaactaaattcagtatcctattgttaccagcacttctcttctactgg 184
           ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 325 gtatgtgttcttttaaccaaattcagtatcctattgttatcagcagttctcttctactgg 384

                                                                       
Query: 185 tccatttaatccattacaccatattgaatcagttacactccgccttctgttgaatttcag 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccatttaatccactacaccatattgaatcagttacactccgccttctgttgaatttcag 444

                                                                       
Query: 245 tttcagtctgtaacatttttttttgttttgt-----cccttactctgtgagaaaacacag 299
           |||||||||||||||||||||||||||||||     ||||||||||||||||||||||||
Sbjct: 445 tttcagtctgtaacatttttttttgttttgttttgtcccttactctgtgagaaaacacag 504

                     
Query: 300 ctagctctat 309
           ||||||||||
Sbjct: 505 ctagctctat 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 714
Length adjustment: 9
Effective length of query: 300
Effective length of database: 705
Effective search space:   211500
Effective search space used:   211500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)