BAC Information

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BAC

Clone NameMSMg01-171H06
Chromosome9 (Build37)
Map Location 76,233,899 - 76,234,165
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
Downstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik, 5730403I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171H06.T7 (MSMg01no171_h06.b1)MSMg01-171H06.TJ (MSMg01no171_h06.g1)
ACCAG367693AG367694
length698816
length of high quality
(start - end)
273 (55 - 327)73 (153 - 225)
definitionCHROMAT_FILE: MSMg01no171_h06.b1 PHD_FILE: MSMg01no171_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:41 2005CHROMAT_FILE: MSMg01no171_h06.g1 PHD_FILE: MSMg01no171_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAAAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTACCCTACACACTTTTACTCTGCAGCCCACTGAGAT
TCCTCTCAAACAGACCACAAAACAGAACACAAAGCATGCCCCAGCAAATA
CAGGGACATTGAAATCACATATATCACTGTATTCAAATACCATGAATTTA
GGATTGATATCAAATACAAGAGAAGAGCAAAAACAAATTCATGGGAGTCA
TGAAAATAAACAAATAAACAAAACAACAACAAAAAAAGCTGGTATTAAAC
CAAAAGTAGACTTAAGAAATGGTAAATTATTTATTATTGAAAATGAGGAA
AATCAAAACAAAATGTTTANAGTACACCTTAAGCGTANCCCACTTTTCTT
TGAAACCATCACATGCGGAAAGCCCCCCACAACGTACCTAAAACAGTGGT
GTTGAGAAATTTCAAAGTAATAATTTATGATAAACCTGAGGGCCTCATAG
AAACAATAGCAAACACTCAAAATGAGCAGTATTGAAGAGGTAATTAAAAT
CAGAGCTGACATTAATGAAACAAACTAAAAATAATAAATGAACGTCATAA
ATAGTTGAGACTTGAAAAAGATTGAGACTGACAAACCTGAAACCACACTA
ACCCCAACAACTAGAGATTTTGATTTACAAAATTAGAGATGAAAAGAG
TGXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGGATTGAGGNGACCTATA
GAAGTTCCTCAGATACACTGNGGGGCTCAGACTTCAAACCAAGGGCCTCT
TGCCACTGATTTTTCCTAAGGAAGCGTTTGAGTGAAGGGGTAGTTGAGAG
NCAGTATCATGAGACAAGAGTTCAGGGGGGNGGTCTGTTCAGATGTCTTC
TAAGCAAGCAGTAGGATTGAACAAGGATAGGGGACAGACTCTTTTTTTAT
CCATACCATCTAACATCGGAAGTACATGCACGCCACGGCTTGCAGCCAGC
CAGCCCCTTTTGTGTTTTTACCCGCCGGACCCACCCAGACAACCCCAATT
TTTTTTTTTTTTTCCCCCCCCCCCCCCGGAAGGGAAGGAAAGGGAGAGGG
GGGTTTGCCCCCCCCCCAAAAAGNAAAAGGAAAAACTTTTCGGGGGGGGG
TTCTCACCCCATACATCACTTTTTCTTCCTTCCTCCCTTTTCTTCTCTCA
GCCTTTCATGCCTTCCTTTCCCTTTTATTTTTATTCGTTTCTCCTCTTTT
TCTCCCCTCTTCCTCTCCTCCACCCCTTTCACCCGTTTACTTAACACACA
CCAATATTACTCCCCTAATTACCTTCCCCACTCTTCCCCCTTTTTTGTTT
ATTTTTTTTAGATCACCCTTTTCTCTCCCCCTCTCCCCCCCATCTTTTTT
TTTTCTTTTTTTTTTTCCCCCCCCCCCCTCCCCATATTCTCACCCCACTT
ATCTCCTTAATTTTACCCGCACTATTATTCATCCTCTCCTCCCCCCCTTC
TTTCTCCTTCCCGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_h06.b1 MSMg01no171_h06.b1 CHROMAT_FILE:
MSMg01no171_h06.b1 PHD_FILE: MSMg01no171_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:41 2005
         (273 letters)



>mm_chr9_76233695_76234366
          Length = 672

 Score =  503 bits (260), Expect = e-147
 Identities = 266/268 (99%), Gaps = 1/268 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaccctacacacttttactctgcagcccactgagattcctctcaaacagaccac 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaccctacacactttttctctgcagcccactgagattcctctcaaacagaccac 264

                                                                       
Query: 65  aaaacagaacacaaagcatgccccagcaaatacagggacattgaaatcacatatatcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaacagaacacaaagcatgccccagcaaatacagggacattgaaatcacatatatcact 324

                                                                       
Query: 125 gtattcaaataccatgaatttaggattgatatcaaatacaagagaagagcaaaaacaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtattcaaataccatgaatttaggattgatatcaaatacaagagaagagcaaaaacaaat 384

                                                                       
Query: 185 tcatgggagtcatgaaaataaacaaataaacaaaacaacaacaaaaaaagctggtattaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 tcatgggagtcatgaaaataaacaaataaacaaaacaacaacaaaaaa-gctggtattaa 443

                                       
Query: 245 accaaaagtagacttaagaaatggtaaa 272
           ||||||||||||||||||||||||||||
Sbjct: 444 accaaaagtagacttaagaaatggtaaa 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 672
Length adjustment: 9
Effective length of query: 264
Effective length of database: 663
Effective search space:   175032
Effective search space used:   175032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)