BAC Information

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BAC

Clone NameMSMg01-171H19
Chromosome9 (Build37)
Map Location 33,078,731 - 33,079,044
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171H19.T7 (MSMg01no171_h19.b1)MSMg01-171H19.TJ (MSMg01no171_h19.g1)
ACCAG367714AG367715
length740754
length of high quality
(start - end)
319 (45 - 363)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no171_h19.b1 PHD_FILE: MSMg01no171_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:43 2005CHROMAT_FILE: MSMg01no171_h19.g1 PHD_FILE: MSMg01no171_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCAGTCTAGGTCACTGAGAAAATGTTCTTGGAAAGTCAAAGTTCA
TAAGGATAAATAGAAACCAGGACCACAGAAGACTGAAAAGTCTGGCCTGT
AGGAATGCAGGGAATATTAAACATAACCAACTCCTAGCCTAATAAATAGA
GATTATTATTCCAAAAGGCTTTTTGCACCAATTTCCTGTATCCCAAGCAA
TATATCCAGCTTGCAACAGCAAAGAAAGTATAAGATCTGCACGGATCAAG
GATAGGAGAAACAATGCAACCAATATAGCAAGCCTCAGAATTATATAACC
ACATAGTTGGAATAANCTGACTGCCAAGACTAAACCCGTTTGACTCATGT
GTCAAGACTCTAAGAAAACCGCCCGTGGAAAGAACAGAGTAATCAGAGGG
ACGGAACACTAAGAAAGCATCAAAGTGAAATAATGGGAAAATATCCATTG
TTACTGAGTACAGTAGATGATGGAGGCAGGGGAATCAGAAGCTCATGTAC
ACTTTTGGATACATGGTAAATCCAGTGCCATCCAGATTACCCAGGTGAAA
ACCTATCTCAATGATAACGTTTAAAAATTCATTTTTTATTGAAAAGAATG
TCTTTAATATCCCACCAATTGACTTGAAAGAGCTGAGGTAATGATGGTGA
CCTTGAAGAGGTGTTCAGTGCAGTGTCCCCCCTGGAGTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGTTAGCAAGAATTTTATTGAGGATTTTT
GCATCGATATTCATAAGAGAACCTGGTCTGAAGTTCTCTATCTTTGTTGG
GTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGT
TGGGTAGAGTACTTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAACT
GGAATTAGATCTTCTTTGAAAGTCTGATAGAACTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTGTCTGGGCGACTATTAATAACTGCTTCTATTT
CTTTAGGTGAATGGTACCGCNNACATGGCCAACCTGATCCTGATTCAACT
TTGGTACCTGGNACCTGTCCAGAAAAAAAAAATTTCGTCCAGGTTTTCCA
ATTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTCAGATT
TCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGCTTTTGTTAAT
TAGGATTTTGTCCCTGTGTCCTTTTATGAGCCTTGCTAAGGTCTCATCTT
TTCTTGTTTATTTTTTCTTAGAATTATTTCTTCGTTTGTTTTAATCTTTT
GAAGTTCTTTCTTGCTTCCATTTTGTTGCATCCCTTTCCTGGCCTTTTTT
CTTTCTTTTTGCTTTTTTTTATTTTCCTTTCATTCGCATTTTCAACTTCC
TACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_h19.b1 MSMg01no171_h19.b1 CHROMAT_FILE:
MSMg01no171_h19.b1 PHD_FILE: MSMg01no171_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:43 2005
         (319 letters)



>mm_chr9_33078527_33079245
          Length = 719

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccagtctaggtcactgagaaaatgttcttggaaagtcaaagttcataaggata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagtctaggtcactgagaaaatgttcttggaaagtcaaagttcataaggata 264

                                                                       
Query: 65  aatagaaaccaggaccacagaagactgaaaagtctggcctgtaggaatgcagggaatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatagaaaccaggaccacagaagactgaaaagtctggcctgtaggaatgcagggaatatt 324

                                                                       
Query: 125 aaacataaccaactcctagcctaataaatagagattattattccaaaaggctttttgcac 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 aaacataaccaactcctagcctaataaatagagattattattccaaaaggttttttgcac 384

                                                                       
Query: 185 caatttcctgtatcccaagcaatatatccagcttgcaacagcaaagaaagtataagatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatttcctgtatcccaagcaatatatccagcttgcaacagcaaagaaagtataagatct 444

                                                                       
Query: 245 gcacggatcaaggataggagaaacaatgcaaccaatatagcaagcctcagaattatataa 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 gcacggatcaaggataggagaaacaatgcaaccaatagagcaagcctcagaattatataa 504

                         
Query: 305 ccacatagttggaa 318
           ||||||||||||||
Sbjct: 505 ccacatagttggaa 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)