Query= MSMg01no171_p10.b1 MSMg01no171_p10.b1 CHROMAT_FILE:
MSMg01no171_p10.b1 PHD_FILE: MSMg01no171_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:18 2005
(320 letters)
>mm_chr9_71392935_71393654
Length = 720
Score = 561 bits (290), Expect = e-164
Identities = 311/322 (96%), Gaps = 8/322 (2%)
Strand = Plus / Minus
Query: 5 gaattctgcttctcatacttgtaagaaaagcacattaccaagtgagtgcctcctcagctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaattctgcttctcatacttgtaagaaaagcacattaccaagtgagtgcctcctcagctc 304
Query: 65 tgactattattaaaggaatcattgatacttaaagtatatctactttcaataacttataca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgactattattaaaggaatcattgatacttaaagtatatctactttcaataacttataca 244
Query: 125 catgacagatgaaatcagaagcctgtctactttggcagt------ctaggaatgccgggg 178
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 243 catgacagatgaaatcagaagcctgtctactttggcagtaaattccta--aatgccgggg 186
Query: 179 tgttcctggagtggagcaggggtaaggccgtggagctatgagtgggggagagaccctttg 238
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 185 tgttcctggagtggagcaggggtaaggccgtggagctatgagtggggaagagaccctttg 126
Query: 239 tttcattaggtctagaataaatgtttacagcagacaaaatcttgtttccaaatgagaagt 298
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 125 tttcattaggtctagaataaatgtttacagcagacaaagtcttgtctccaaatgagaagt 66
Query: 299 ccggcctcgatgtattgagtct 320
||||||||||||||||||||||
Sbjct: 65 ccggcctcgatgtattgagtct 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_p10.g1 MSMg01no171_p10.g1 CHROMAT_FILE:
MSMg01no171_p10.g1 PHD_FILE: MSMg01no171_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:19 2005
(286 letters)
>mm_chr9_71233146_71233831
Length = 686
Score = 518 bits (268), Expect = e-151
Identities = 277/280 (98%)
Strand = Plus / Plus
Query: 4 aatttacatggaactattaggtccctgaataatcaaagcagtttggaagaagaatgtatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aatttacatggaactattaggtccctgaataatcaaagcagtttggaagaagaatgtatt 263
Query: 64 agaggaagcatggtctttgattttaaattcattgcaaactatgttatcaaaaatcaaatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaggaagcatggtctttgattttaaattcattgcaaactatgttatcaaaaatcaaatc 323
Query: 124 agcaagacattttcgagaaacaaaggtacacacagaaggtgatcacagaacagaactaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcaagacattttcgagaaacaaaggtacacacagaaggtgatcacagaacagaactaac 383
Query: 184 agtctagaaaaaaattgcatgcatatgcaattaactagtccctggcgaggtaaatagtct 243
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 agtctagaaaaaaatcgcatgcatatacaattaactagtccctggcgaggtaaatagtct 443
Query: 244 ccttaacatgtggtattaaggaaagttgagatctacacat 283
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 ccttaacatgtggtattaaggaaagctgagatctacacat 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
