BAC Information

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BAC

Clone NameMSMg01-172F14
Chromosome9 (Build37)
Map Location 51,135,373 - 51,135,657
singlet/doubletsinglet
Overlap gene1810046K07Rik
Upstream geneLOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684
Downstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172F14.T7 (MSMg01no172_f14.b1)MSMg01-172F14.TJ (MSMg01no172_f14.g1)
ACCAG368288AG368289
length738736
length of high quality
(start - end)
138 (219 - 356)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no172_f14.b1 PHD_FILE: MSMg01no172_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:48 2005CHROMAT_FILE: MSMg01no172_f14.g1 PHD_FILE: MSMg01no172_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
ATAATATCGATGCTGATTTCTCCCACCTTTAATGTGAGAGCAAATTCACA
TTTAGGGTAGGGATTACCTTTGAGAACAGATAAAAGTCATATAAACCAAA
ACCACTAAATGGGTAACTGGGTAAAAGTGTGCTCAGGTCCAATAACATCA
CTACTTAGGGCACAGAAATGGAGGCTGGAAAGAAGACTTGGAGGTTAATA
ATGCTTACAACTCTTACAGAACCCAAGTTTGATTCCCAGTACCCACATTA
GGTGGCTCAGACTTTCTGTATCTCTAGCTCTGCGGAATCCTTTATTCTTC
ACTATTTTTCTCCTCCGGACGATCCCCAAAATAATTATTTAAAATAATAA
AGTATGAAAAAACTGGACACAAAAAATCATTATCTGTAATTCAATCACAA
AGAAGGTTGAGGCAGGAGGATTATAAGTTCAAGGCTTGTCTCAGCTACTT
AAGGAGTTGAAGACCAGCCTTGATCCATTGATGAGAACCTATCTCTTAAG
AATCACTTTCCAATTAAACAAAAAAAATGATTCCCTTTCTAGTGGCACTT
ATAAATTGCCTAAAAGAAATTTTGAAGACCGCCCCCTCTTCAGAAGATTT
TGCTTTACATTCCCTCGATAGGACATTTTAACTGAAACCGAGAGATTTTT
CCCTTCCGCGACCGACTGCACTTTTTGACACTCCCCCC
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTAGAGAGGCTAAGGAGGTGCTGGTGACA
TGAAGCACGGAAATGAAATGACCTGGTGAGACAAACATCCAATCAGACCT
CCCCTACAACTTCAGCAAAGACGTTCCATTCTGAGTTCTGTAACCCAACG
ACAGCACAACGAAGTCAGTGGGCACAGCTCTGAGTCATAGCTCCTTACAT
CACTGTATATAGTTCTCCAGTCACTCAGAAGAGTCAAAGAATACTGAATG
GGTGGGTTGTTGATGGGTACAAGCCTTTGTGCTTGTTCCAGATTCTGATT
GTGAGATTTTTTTACTGCCCCCCCCCCCAGCGCAACAATGATATAGTGTG
CTTGGTCATTGTCAGGGCTAACTGAACATCTGTTGTACCTTTTCGTCATC
CCGCCCCTTGGCTCTGTCTGCCTCACTGAGGGGAAGGCAGATACTCTCTC
ATAAACACCGGTGCTGCTTGCTGTGCCTCTACTAGAAGCTTTCTGTGTGT
GCCTCTGCTTCCGATCTGGGAATCAGGCGCATTAATTTTATTGACAGGAG
ACCATCAGAGGTGAAAAGTTTCCAAGGTCATCAAGACCTAAAGTGTTGCA
TTATTATTCAGAATACGATGCACACGGTTTCTGACATCATCAGATAAAAG
TACAGACGGCACTTTTTGAACACGAACAGTCAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_f14.g1 MSMg01no172_f14.g1 CHROMAT_FILE:
MSMg01no172_f14.g1 PHD_FILE: MSMg01no172_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:48 2005
         (285 letters)



>mm_chr9_51135173_51135857
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagagaggctaaggaggtgctggtgacatgaagcacggaaatgaaatgacctggtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagagaggctaaggaggtgctggtgacatgaagcacggaaatgaaatgacctggtgag 260

                                                                       
Query: 61  acaaacatccaatcagacctcccctacaacttcagcaaagacgttccattctgagttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaacatccaatcagacctcccctacaacttcagcaaagacgttccattctgagttctg 320

                                                                       
Query: 121 taacccaacgacagcacaacgaagtcagtgggcacagctctgagtcatagctccttacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacccaacgacagcacaacgaagtcagtgggcacagctctgagtcatagctccttacat 380

                                                                       
Query: 181 cactgtatatagttctccagtcactcagaagagtcaaagaatactgaatgggtgggttgt 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cactgtatatagttctccagtcactcaaaagagtcaaagaatactgaatgggtgggttgt 440

                                                        
Query: 241 tgatgggtacaagcctttgtgcttgttccagattctgattgtgag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgggtacaagcctttgtgcttgttccagattctgattgtgag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)