BAC Information

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BAC

Clone NameMSMg01-172J10
Chromosome9 (Build37)
Map Location 52,233,665 - 52,233,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172J10.T7 (MSMg01no172_j10.b1)MSMg01-172J10.TJ (MSMg01no172_j10.g1)
ACCAG368452AG368453
length719719
length of high quality
(start - end)
320 (44 - 363)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no172_j10.b1 PHD_FILE: MSMg01no172_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:05 2005CHROMAT_FILE: MSMg01no172_j10.g1 PHD_FILE: MSMg01no172_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGCTTTGACCTTTCTTTGGTGTTTGCGTTTTCTGTGTGTTCAGTG
GGTAGACACGGTGTGATTGCCACCCCTCGTTCAACTTGACTGATCTGGAG
TCACTTAAATGATTACCAAAATACGATTCTGGATGTGTCTGTACAACCAT
TTCCAGAGTATGAAGTGAGGTGAAGACACACTCGGAAAGTGGATTGGTAC
TATGCCTGGGAAGGTCACCCCGACTGGATAAAAGAGGAAACCGGAAACAC
CAAAGTGCTACAATTCCCCTGTCTGCTTACTCTCCACCATGCTGGTAACC
CCCATCCTGATTTGAATGCCACAACCCTCTGAACCACGAGCCAAAATAAC
TCCTCCCCCCCTTTTACAGTTGTTTCTGCTAGGCATTGATCCCAGTGACT
CCAAAATTTAGCTAATTTAACTCCAAAGTTAAGTGAAGTGTTCCCACTTA
CTGGGTGTCCACTAAGATGCAGCATGACCGACCCAGATTCTCCACAGTGC
TGATAGTACCAAAAGGTCAGACTTTTGTGACTGTGACTTAAACAATAGTA
ATGCTGCTTTCTTCCTCCCCCCCCTTTATCAGTATTATACATAGTGCTTT
GTTCCATTGCACTTTTCAGGCACAGTGTTTTCTTTATCACGCCTGTCCCG
ATATTTTTATCTCTCCTGT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTACATGTCAAGGCAGCTCCTGCT
GAGCTTCCGATATGGCACTGGCCTCATGGGGGACACAAAGATGAACGCCA
TGGCCTCCAGCAGAGTGAATCTGATGGGCCAGAGACACAGCCAAAAATGA
AACAGAGTGGAGTAATTTCTGCAACAGAGGCACAGTGTGGGACCTCTGGC
AAGCAGAGGCTGATAGATAATTTTTTTTTTAGGAGACTCAGAGGGCTAAG
CAAAGTGGTGTGCACATGATACTGGAGACTGGAGAACCTGGACATGACGT
TGCTTACCTGTTTTTCAGTGCCTCGCCACCTCAGACTCTGTCTTTAACCA
ATTGCGTTAATGTCCTCTTCAATCCACTCACGGCTTTAGGACCTTGCTTC
TGGTATGACTGAACCTCCATTTCAATATTTATAGAACTGAAATAATAAGA
GTGCCTACCTGATGCTGGGAGAGTTGCCCACAAAGTTAGTATAAAGTAAG
GACTCAATAGGTGGTAGCCATTGATTATTTTTGGTCAGGCCATTTGTGGG
AGAGATGGTTGTTGGGCAGGTATAGATCATTTAGGGTCCAGTATGAGTAT
GAATTAAGACCCTGATATATAGATTGTTTCAGAGAGCAGCAATTGTTGTT
TGGTTATATGCATATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_j10.g1 MSMg01no172_j10.g1 CHROMAT_FILE:
MSMg01no172_j10.g1 PHD_FILE: MSMg01no172_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:05 2005
         (282 letters)



>mm_chr9_52233465_52234146
          Length = 682

 Score =  495 bits (256), Expect = e-144
 Identities = 274/280 (97%), Gaps = 2/280 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacatgtcaaggcagctcctgctgagcttccgatatggcactggcctcatgggggaca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agtacatgtcaaggcagctcctgctgagcttccgatatggcactgggctcatgggggaca 260

                                                                       
Query: 61  caaagatgaacgccatggcctccagcagagtgaatctgatgggccagagacacagccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagatgaacgccatggcctccagcagagtgaatctgatgggccagagacacagccaaa 320

                                                                       
Query: 121 aatgaaacagagtggagtaatttctgcaacagaggcacagtgtgggacctctggcaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaaacagagtggagtaatttctgcaacagaggcacagtgtgggacctctggcaagca 380

                                                                       
Query: 181 gaggctgatagataattttttttt-taggagactcagagggctaagcaaagtggtgtgca 239
           ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggctgatggata-tttttttttctaggagactcagagggctaagcaaagtggtgtgca 439

                                                   
Query: 240 catgatactggagactggagaacctggacatgacgttgct 279
           ||||||||||||||||||||||||||| |||||| |||||
Sbjct: 440 catgatactggagactggagaacctgggcatgacattgct 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)