BAC Information

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BAC

Clone NameMSMg01-172M09
Chromosome9 (Build37)
Map Location 47,125,986 - 47,126,231
singlet/doubletsinglet
Overlap genenone
Upstream gene4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M09.T7 (MSMg01no172_m09.b1)MSMg01-172M09.TJ (MSMg01no172_m09.g1)
ACCAG368584AG368585
length766731
length of high quality
(start - end)
246 (62 - 307)123 (159 - 281)
definitionCHROMAT_FILE: MSMg01no172_m09.b1 PHD_FILE: MSMg01no172_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:19 2005CHROMAT_FILE: MSMg01no172_m09.g1 PHD_FILE: MSMg01no172_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGCGGAAT
TCCAGACCATATTGGGCTTCATAGCAAGATCTTGTCTCGAAAAAAAAAAT
AAATTAAATTAAATAATGTCCCGTTGGACTACCATCAATTATTGAAAACT
TCATCCCAGCATTTTCTGTTACCTTTATCATAATGAGATGAGCAGATGTT
TGTGCCTGGTTTTAGACTACACTCTGATTACTTATCTATTTCTGTCTTAT
CTCTTCACCATGGTCAGACTTTTTGCAGCCTTTCTAAATCTTGATGGTGT
TTTAAGTAAATACTATTGTCTTATGAGCCCAGAAAGTGAAGAAATGCTTC
CTTTAATGAAGTTTCCCCCCCTCCCCCGCTTGACCGATTATTTGATATTA
AATTACCTACCCCCACATTATAAAAAATAATGCTCTTTTACGCCCGGACC
TTAAATGCGCCGCGAATGTCAATTCTCCCCCAACAGCTCATGTGCTCCCA
ATTCGTCTCTATATTTTCCTGCGCCCTTGTCATTCTCCGACACTCTCCAA
TAATATCATCCTCCTCTTCAATTATTTATTCCACCCCCCACCCCCCCATC
CTCTCTCTCTACACACCATCTTTCCTTCTTTTTTTTCCCCCCTCTTCTTT
TTTTTTATTTTCCTCTTCCCCTTTTTTTTTTTTTCTCTTTTCTTTTTATT
CCCCCTCCATCTAATATTATTCGTCTCTCCCCCCCACCCACTCCCCTAAT
AATATATTCTACACTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCCTAAAGAATCCAGTTCTGGGGAGAG
AGGCAGGTGTATCCCTAGGGCCTCTCAGAGTCACTAAATTCCAGGGAAAA
GTGAGAGACCCCCGTGTCAACAAACAAGCTAGAGTGACTGAGGAAGATAG
CTTGAGATTGTCCACTGGCCTCCACACACCCATGCACACACGTGCACATG
CACGTGCATTTGCGCGCGCGCGCGCACACACTCACACACACACACACACA
TACTCACACACACCCACATTTTCTCTCTCTCGATATAAATTAACACACTC
GCTTACTTTTTGTGTTTCCNNACGANCCCCTGCTTTCTTACAAAGTATTA
CGGCATAGTTTTCGACCCCCCGAAAAAACATATCCGTGTGTGGGCCTTGA
TTTAACCCATCTACCCTATGTTCACGCATCTGATGTCACATCGTCCCGTT
TCTGAGTCGACAGCTGCCTCAGTGCCGCTCATCCCACCTTCATACTGGCA
ACGTCTGTTCCTCCTTTATACCCCATCTACCCTCGGTTCATATGGCTAGT
GTCTTAAAATTACCCTTAACTTTTTTCTCCTCCTTACAAGTTCCCTTCTC
AATGTTATACCCGATTGCCCCATTGTTATAGCTCTGCCTCAATTATCAGG
CATTTTTTCTTACTACCTCAATCTCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m09.b1 MSMg01no172_m09.b1 CHROMAT_FILE:
MSMg01no172_m09.b1 PHD_FILE: MSMg01no172_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:19 2005
         (246 letters)



>mm_chr9_47125787_47126432
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggcttcatagcaagatcttgtctcgaaaaaa-aaaataaattaaattaaataatgtc 59
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 200 ttgggcttcatagcaagatcttgtctcgaaaaaataaaataaattaaattaaataatgtc 259

                                                                       
Query: 60  ccgttggactaccatcaattattgaaaacttcatcccagcattttctgttacctttatca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccgttggactaccatcaattattgaaaacttcatcccagcattttctgttacctttatca 319

                                                                       
Query: 120 taatgagatgagcagatgtttgtgcctggttttagactacactctgattacttatctatt 179
           |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 320 taatgagatgagcagatgtttgtgtctggttttagactacactctgattatttatctatt 379

                                                                       
Query: 180 tctgtcttatctcttcaccatggtcagactttttgcagcctttctaaatcttgatggtgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctgtcttatctcttcaccatggtcagactttttgcagcctttctaaatcttgatggtgt 439

                 
Query: 240 tttaag 245
           ||||||
Sbjct: 440 tttaag 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)