BAC Information

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BAC

Clone NameMSMg01-173F12
Chromosome9 (Build37)
Map Location 99,187,177 - 99,340,942
singlet/doubletdoublet
Overlap geneCep70, D9Ertd280e, Mras
Upstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459
Downstream geneLOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173F12.T7 (MSMg01no173_f12.b1)MSMg01-173F12.TJ (MSMg01no173_f12.g1)
ACCAG368976AG368977
length726734
length of high quality
(start - end)
301 (46 - 346)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no173_f12.b1 PHD_FILE: MSMg01no173_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:00 2005CHROMAT_FILE: MSMg01no173_f12.g1 PHD_FILE: MSMg01no173_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,340,649 - 99,340,942)(99,187,177 - 99,187,450)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTCATTCCTTCCCTGCCCCTCCCTCCAGGATCCTGGTGCTAT
GATTGTTAGATATTTGAGTGCGTCCTGTGTAACCTCTGGGCTGTGATCAC
TCGGGCTTCTTTTTCTCTCTCTGTGCTTTAGTTTCCATGTCATCCTCAGA
TTGCATCAAGCCTCTACACAACTGTGCTCAGTCTCCCATTAAACTGACCT
AATGCAACCTTGATTTTAGTTACAATTTTTAATTTTTATATATTTTGAAC
CCTTTTGTATATTTCATTTTCCTCCGTGTATTAATCATCCGTGNGGANAG
NTTGAGCTTTGTTCNATNGCCAGNCCGCTTGCAGATTTCCATGGGCAGAT
GTGATCGCTGCCCAAATAAAAAACATGTCTGACGGTGTTTCTCACTTGGT
TCTCTCTTGTCCTCCTGTCTCAGCCAGACCTACTGCCCCAACTGCTAACA
CACTATCAGCTAGTTTTATTATTTAAGATTTTATTTTATGTTAACTTCAT
GTGCTTGGTAGGGTATACATATATATTATATGTTATATTACACATTACAC
ATTATATATATATATATACACACACACCTGTATACACACTCACATATACA
TATACATATACACATATTCATATTCATACACACACACACTCATACACACA
CCAATACACTCTTTCTTATTCTCATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGCATCCAGTTTTGCTGTTCATG
CTGCTGTAATAAGGATAGAATAATAGGATATGGGCCCTCCCACAGTGGGT
GAGTGAGATATTCATTTTAATGAGGAGTTTTAACTAAGTCCCCAGAGTAG
AAGAAGTGGAGTCTCTGCTGCTATTCTTGAGAAAGCCCAACTTGAGGTTC
TTGGCAGTAGTTGCTAGGATTTTGCTAATTGGAAAACATGGGAAATTACA
TGTTCTGGGTCCAACGTCTTATCATCAGTAAGAAATGGCCTGCTATGTAG
NACCTCTAAATGGATCCGNNNTCATAGCCCCGTTTTTAAGCCTGATTAGA
GGTGTAAGGGTAATTTAGAACAAAAAAAATATGGTTTCCTGGAGGAGCCT
TTTTAAATGCCTCTTTAAAAGCTTATTTCCCAGAGCCAACATGAAAACTG
CAACTGAGGGAGTAAGAGTGGTTATAGAAAAGACAGAAAGAAGATGCAAG
AGACAGGTATGGAGGGCTGCAGGCTAATACCATGCCAGCAGTTAGTATAT
TTTCTCAGTGTCTTTTAAAGGCAAGCAACAGAAAACATGAGCAATTCCAA
TTGGCCATGTCTCTTTTTCAGAGAGTTTCAAGAAAACTCCAACCCACGCC
TATGCTTAGATTGAATGGATCTCTGAATCAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_f12.b1 MSMg01no173_f12.b1 CHROMAT_FILE:
MSMg01no173_f12.b1 PHD_FILE: MSMg01no173_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:00 2005
         (301 letters)



>mm_chr9_99340515_99341215
          Length = 701

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtcattccttccctgcccctccctccaggatcctggtgctatgattgttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaattctctgtcattccttccctgcccctccctccaggatcctggtgctatgattgttag 369

                                                                       
Query: 65  atatttgagtgcgtcctgtgtaacctctgggctgtgatcactcgggcttctttttctctc 124
           ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 atatttgagtgtgtcctgtgtaacctctgggctgtgatcacttgggcttctttttctctc 309

                                                                       
Query: 125 tctgtgctttagtttccatgtcatcctcagattgcatcaagcctctacacaactgtgctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tctgtgctttagtttccatgtcatcctcagattgcatcaagcctctacacaactgtgctc 249

                                                                       
Query: 185 agtctcccattaaactgacctaatgcaaccttgattttagttacaatttttaatttttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agtctcccattaaactgacctaatgcaaccttgattttagttacaatttttaatttttat 189

                                                                 
Query: 245 atattttgaacccttttgtatatttcattttcctccgtgtattaatcatccgtg 298
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 188 atattttgaacccttttgtatatttcactttcctccgtgtattaatcatccgtg 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no173_f12.g1 MSMg01no173_f12.g1 CHROMAT_FILE:
MSMg01no173_f12.g1 PHD_FILE: MSMg01no173_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:00 2005
         (276 letters)



>mm_chr9_99186977_99187652
          Length = 676

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatccagttttgctgttcatgctgctgtaataaggatagaataataggatatgggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcatccagttttgctgttcatgctgctgtaataaggatagaataataggatatgggcc 260

                                                                       
Query: 61  ctcccacagtgggtgagtgagatattcattttaatgaggagttttaactaagtccccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcccacagtgggtgagtgagatattcattttaatgaggagttttaactaagtccccaga 320

                                                                       
Query: 121 gtagaagaagtggagtctctgctgctattcttgagaaagcccaacttgaggttcttggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagaagaagtggagtctctgctgctattcttgagaaagcccaacttgaggttcttggca 380

                                                                       
Query: 181 gtagttgctaggattttgctaattggaaaacatgggaaattacatgttctgggtccaacg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaattgctaggattttgctaattggaaaacatgggaaattacatgttctgggtccaacg 440

                                             
Query: 241 tcttatcatcagtaagaaatggcctgctatgtag 274
            | |||||||||||||||||||||||||||||||
Sbjct: 441 ccatatcatcagtaagaaatggcctgctatgtag 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)