BAC Information

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BAC

Clone NameMSMg01-173H09
Chromosome9 (Build37)
Map Location 111,135,712 - 111,136,353
singlet/doubletsinglet
Overlap geneMlh1
Upstream geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2
Downstream geneEpm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173H09.T7 (MSMg01no173_h09.b1)MSMg01-173H09.TJ (MSMg01no173_h09.g1)
ACCAG369062AG369063
length728728
length of high quality
(start - end)
301 (386 - 686)644 (77 - 720)
definitionCHROMAT_FILE: MSMg01no173_h09.b1 PHD_FILE: MSMg01no173_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:09 2005CHROMAT_FILE: MSMg01no173_h09.g1 PHD_FILE: MSMg01no173_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCCCCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACTTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTATCGGAGGATCCTGCAATACCTCTTCTGGGCA
TATATCCAGAAGATGTTCCAACCGCCCCCCCACCCACACATGCTCTACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGTCCCTCAACAGAGGAATGGATACAAAAATGTAGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAA
GGAACTCACATGATATGTACTCACTGACAAGTGTATATTAGCCCAGAAAC
TTAGGACACCCAAGATATAAGATACAATTTGCTACACACATGACACTCAA
GAAGAACAAAGACCAAAGTGTGGACACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCACACGACGGC
TCACAGCCATCTGTACAGTTACCCCGTGCTCATACACATAAAATAAATAA
ATAAATCTGTAAAAAGAAAAGTGAGGAGGAAAGAAACTTACCGATAACCT
CAGAACACCAAAGTTGGCAAAATCATAAATGAGTATCTGGTAGAACAGCT
CTTCACTGAAAATGAGAAAAATGAATGTGTGATTGAAGCCGAGCAGCAAG
GGCAGAATGGGACAAAGCTGCTGCTGCCTGGCTAAGGAGGTCCTCTCTAT
GCAAAGGACTGGGATTCCCAAGTGCTGACTCCTGCCAGGACCCTGCAGCC
ATCTCTCCTGGACAAGTTCAATTACTAAGTCTGCTCATCTCCTCACTAGG
GCTGTAAACGGTTTCAGACACTGGCAATGAATTTTATGACACTGTTTGTT
TACTGTTCCCCAGTTAGCGAAGAGCACTAGAGATCACCTTTGACAATTCA
CCATTCAACACCATAGGGTGGAGTGTTTGCCTCGCATATGAAGGCCTAGG
TTCTACCCTTAGCACCACAGAAAGTGTGTAGGTGAAAACGTTTATGGAGT
ACAGAAAGGGCAGTGTTTTCCTGAATCATCAGAAACGAACCCTAAGGCAG
AATTATCCTGTACAGCTGGTGGGTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_h09.g1 MSMg01no173_h09.g1 CHROMAT_FILE:
MSMg01no173_h09.g1 PHD_FILE: MSMg01no173_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:09 2005
         (644 letters)



>mm_chr9_111135512_111136554
          Length = 1043

 Score = 1162 bits (601), Expect = 0.0
 Identities = 633/645 (98%), Gaps = 5/645 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcccagcaaccacacgacggctcacagccatctgtacagttaccccgtg--ctcata 58
           |||||||||||||||||||||||||||||||| ||||||||| ||  | |||  ||||||
Sbjct: 201 aattcccagcaaccacacgacggctcacagccgtctgtacagcta--cagtgtactcata 258

                                                                       
Query: 59  cacataaaataaataaataaatctgtaaaaagaaaagtgaggaggaaagaaacttaccga 118
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 259 cacataaaataaataaataaatctttaaaaagaaaagtgaggaggaaagaaacttaccga 318

                                                                       
Query: 119 taacctcagaacaccaaagttggcaaaatcataaatgagtatctggtagaacagctcttc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taacctcagaacaccaaagttggcaaaatcataaatgagtatctggtagaacagctcttc 378

                                                                       
Query: 179 actgaaaatgagaaaaatgaatgtgtgattgaagccgagcagcaagggcagaatgggaca 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 379 actgaaaatgagaaaaatgaatgtgtgattgaagccgagcagcaagggcagaataggaca 438

                                                                       
Query: 239 aagctgctgctgcctggctaaggaggtcctctctatgcaaaggactgggattcccaagtg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 aagctgctgctgcctggctaaggaggtcctctctatgcaaaggactgggattccc-agtg 497

                                                                       
Query: 299 ctgactcctgccaggaccctgcagccatctctcctggacaagttcaattactaagtctgc 358
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgactcctgccaggaccctgcagccatctctcctggacaagttcaattactaagtctgc 557

                                                                       
Query: 359 tcatctcctcactagggctgtaaacggtttcagacactggcaatgaattttatgacactg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcatctcctcactagggctgtaaacggtttcagacactggcaatgaattttatgacactg 617

                                                                       
Query: 419 tttgtttactgttccccagttagcgaagagcactagagatcacctttgacaattcaccat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttgtttactgttccccagttagcgaagagcactagagatcacctttgacaattcaccat 677

                                                                       
Query: 479 tcaacaccatagggtggagtgtttgcctcgcatatgaaggcctaggttctacccttagca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcaacaccatagggtggagtgtttgcctcgcatatgaaggcctaggttctacccttagca 737

                                                                       
Query: 539 ccacagaaagtgtgtaggtgaaaacgtttatggagtacagaaagggcagtgttttcctga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccacagaaagtgtgtaggtgaaaacgtttatggagtacagaaagggcagtgttttcctga 797

                                                        
Query: 599 atcatcagaaacgaaccctaaggcagaattatcctgtacagctgg 643
           ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 798 atcatcagaaacgaaccctaaggcagaattatcctgtactgctgg 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space:   654922
Effective search space used:   654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)