Query= MSMg01no173_i08.b1 MSMg01no173_i08.b1 CHROMAT_FILE:
MSMg01no173_i08.b1 PHD_FILE: MSMg01no173_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:13 2005
(587 letters)
>mm_chr9_61227023_61228007
Length = 985
Score = 1062 bits (549), Expect = 0.0
Identities = 576/585 (98%), Gaps = 4/585 (0%)
Strand = Plus / Minus
Query: 4 gaattctaaagagcattgccaaaaggagcccctggtaaccacacaaccctgctgcagaag 63
||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||
Sbjct: 785 gaattctaaagagcagggagaaaaggagcccc-ggtaaccacacaaccctgct-cagaag 728
Query: 64 agcgcatggaatagtagaattgggagtagggcttcccagcaggcttctctatcttcatct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agcgcatggaatagtagaattgggagtagggcttcccagcaggcttctctatcttcatct 668
Query: 124 agtcctaaggtcatctcaatggtcaggtgtacaagaaggaaaagactcgggaggagtaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agtcctaaggtcatctcaatggtcaggtgtacaagaaggaaaagactcgggaggagtaca 608
Query: 184 gaaagctttgctctgtacacttctatcgtctaccacagacaagggatccactgaagcctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gaaagctttgctctgtacacttctatcgtctaccacagacaagggatccactgaagcctg 548
Query: 244 agatgagagggttaggtcaccctctagctggatgggacaaagttaaaaagagcttcaggc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agatgagagggttaggtcaccctctagctggatgggacaaagttaaaaagagcttcaggc 488
Query: 304 tcagtaattcccaaggtacagcaaagatggtgccctgctggggagatcacacaaccccca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcagtaattcccaaggtacagcaaagatggtgccctgctggggagatcacacaaccccca 428
Query: 364 caattccaaggtagagcaacaaggcagctaaagtcaaagaacccacggtgtgggtgaatg 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 427 caattccaaggtagagcaacaaggcagctaaagtcaaagaacccacggtgtgggggaatg 368
Query: 424 aaggagctcccggcaaagaagtcaatctcaccgctcaacccagatgccacacaaacaggc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaggagctcccggcaaagaagtcaatctcaccgctcaacccagatgccacacaaacaggc 308
Query: 484 actg-ccctagtaccagggcctgcatccccaatcctactgccaccaaagcctgtcaactc 542
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 307 actgcccctagtaccagggcctgcatcccc-atcctactgccaccaaagcctgtcaactc 249
Query: 543 tttggcatggtctttccagaaaactgttgcctatggtcggccttc 587
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttggcatggtctttccagaaaactgttgcctatggtcggccttc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 985
Length adjustment: 10
Effective length of query: 577
Effective length of database: 975
Effective search space: 562575
Effective search space used: 562575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_i08.g1 MSMg01no173_i08.g1 CHROMAT_FILE:
MSMg01no173_i08.g1 PHD_FILE: MSMg01no173_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:13 2005
(234 letters)
>mm_chr9_61140245_61140878
Length = 634
Score = 420 bits (217), Expect = e-122
Identities = 229/233 (98%)
Strand = Plus / Plus
Query: 1 tggcatgtggaacacgtgactcttccaccctctgagccacctcacttgcctcctaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcatgtggaacacgtgactcttccaccctctgagccacctcacttgcctcctaccttc 260
Query: 61 tgttttgagaagcagtcacgtgaccagaggccaaaggcagcactgatctctttgttacag 120
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttttgagaagcagtcacttgtccagaggccaaaggcagcactgatctctttgttacag 320
Query: 121 ccctgttaaaagaggagccaggtgtgagtgcacacacctttaatcccagcccttgggagg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ccctgttaaaagaggagccaggtgtgagtgcgcacacctttaatcccagcccttgggagg 380
Query: 181 cagagctggtggatctctgagttggaagctagcctggactatagagtgaattc 233
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagagctggtggatttctgagttggaagctagcctggactatagagtgaattc 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
