Query= MSMg01no173_i22.b1 MSMg01no173_i22.b1 CHROMAT_FILE:
MSMg01no173_i22.b1 PHD_FILE: MSMg01no173_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:15 2005
(297 letters)
>mm_chr9_72489948_72490644
Length = 697
Score = 538 bits (278), Expect = e-157
Identities = 293/298 (98%), Gaps = 2/298 (0%)
Strand = Plus / Plus
Query: 1 acacagagaaaccctgcccccgaaaaaaaaaagaaaggaaaaaaaatttt-caagcacca 59
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 201 acacagagaaaccctgcccccgaaaaaaaaaagaaaggaaaaaaaatttttcaagcatca 260
Query: 60 atcccactcctcttttttttttttttggtttttcgagaggcttaatcccactcctcttaa 119
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctactcctcttttttttttttt-ggtttttcgagaggcttaatcccactcctcttaa 319
Query: 120 tacattgtgtgagccccacaaaaacatctgatctagaccacttccctgggagtcattcca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacattgtgtgagccccacaaaaacatctgatctagaccacttccctgggagtcattcca 379
Query: 180 cttctctgtgtggaatgtttgaagtctctttcaggttcacggagaggagcccttggtttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttctctgtgtggaatgtttgaagtctctttcaggttcacggagaggagcccttggtttc 439
Query: 240 aaaggaaattctcacaatacctccttagtggctcactctccttctctgggggctacca 297
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aacggaaattctcacaatacctccttagtggctcactctccttctctgggggctacca 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_i22.g1 MSMg01no173_i22.g1 CHROMAT_FILE:
MSMg01no173_i22.g1 PHD_FILE: MSMg01no173_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:15 2005
(565 letters)
>mm_chr9_72626596_72627560
Length = 965
Score = 590 bits (305), Expect = e-172
Identities = 375/419 (89%), Gaps = 36/419 (8%)
Strand = Plus / Minus
Query: 1 ctaaggcaattacgtagagcccctccctgccctcctgttttctccgtggcctcctgactc 60
|||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 393 ctaaagcaattccgtagagcccctccctgccctcctgttttctccgtggattcctgactc 334
Query: 61 gctcagctcagtcagagtgctccggtctgtgtccttagggctccggaggtgcaggtgatg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gctcagctcagccagagtgctccggtctgtgtccttagggctccggaggtgcaggtgatg 274
Query: 121 ggataaactgattggtacacagcagggatactgtggctgctgaatggactattatgataa 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggataaactgattggcacacagcagggatactgtggctgctgaatggactattatgataa 214
Query: 181 gtaagtattgcaaggaatagatggctctctccagagcattctgcaatattctagaatgcc 240
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 213 gtaagtattgcaa---------------ctccagagcattctgcaatattctagaatgcc 169
Query: 241 ttcagcctcttcagtaaacattatgggagatactaagaggtcttttttga-----ttttt 295
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttcagcctcttcagtaaacattatgggagatactaagaggtcttttttgacaggg----- 114
Query: 296 tttctc-----cgccccccccctggctgtcctggagctcactttgtagaccaggctggcc 350
|||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tttctctgtatag------ccctggctgtcctggagctcactttgtagaccaggctggcc 60
Query: 351 tcgaactcaaaaatccgcctgcctctgcctcccgagtgctgggactaaaggcgtgcgtc 409
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 tcgaactcagaaatccgcctgcctctgcctcccgagtgctgggactaaaggcgtgcgtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
