BAC Information

Click to search

BAC

Clone NameMSMg01-174H22
Chromosome9 (Build37)
Map Location 6,185,524 - 6,185,783
singlet/doubletsinglet
Overlap genePdgfd
Upstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037
Downstream geneDdi1, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174H22.T7 (MSMg01no174_h22.b1)MSMg01-174H22.TJ (MSMg01no174_h22.g1)
ACCAG369778AG369779
length744735
length of high quality
(start - end)
260 (435 - 694)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no174_h22.b1 PHD_FILE: MSMg01no174_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:22 2005CHROMAT_FILE: MSMg01no174_h22.g1 PHD_FILE: MSMg01no174_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTCAAAATAACACAGGACACTTCACTCAGGGCAAAATGTTTAAAGTAAT
CTCATCTATAAACCTTGCCATATGGGGTAACATTTATTAATTATAGCATT
AGGGTATTGATTGCTTGGGTCATATATAGCCTGCTACTTAATATATTGTT
TTCTAGTCTGTTCTAAAATATTTTAAAATATGAGCAGATTTTCAAATGAC
CTCAAACATTATTTTAAAGGTATATGAATGCACAGGAACTTTATGCCCAA
CAATTACATGGCTGTCACATACTGGGACTGATCTCTGGTCACCACATCAT
GGAGGAGGACTATTTTTCTACCCCCCCCCCACACAGTCTGTCTATATATG
CACATTGGATCTCAGCACCTTGTGCCATTCCATGAGGGTAATTTATCACT
TCTCAAATCATGATAATGCTTTTCTCCCCTGAAGATTCCTTTTCAATGAC
TTGCCAAGGAAAGGAAGGTGGCTAACTCATTAGCTCTGTGTCCAAAGATT
TGCCAACCAATAGCTGCTCAAAAGCATTTACTCTTGTAAAAAAATAAATA
AATAAAAATCTCCAAGTCCTCAAAGTTCCTAAACTGGATCTTCATGATCT
TTACACAGACATACTGCATATTTAAAGAGACTTAACACATGAAATAGGTT
AAAAATAAAAGTAGTTAAACATTTATCTAAATTATTTCAACATG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATTTCCAGCAGCCACATGATGGCTAACC
AAATCTGTACAGGGATTCCTCTTCTGGTGCATCTGAAGACAGATACAGCA
TACACATATACATTAAATAAATGATAAAAAATAATGTTAAAAAGCTGGAC
TTCAACAACAATAGAAACATCAGAAAGGATACAAAGTCATGGAAACTGGA
GAGCTCTCACCTCAATGATCCCTGGGTTAGCGAAGAATTAAAGAAAGATA
TTAAAGACTACCTAGAATTTAAAGAAAATGAAGGCACAGCATATCCAAAC
TTATAGAGCACAATGATATGCACACCTACCCCGAAAGGCCATAGCACTAA
GTAGCTTCATACAGAAATTACAGATTTCTCACACTACCAACTTAAAAGTA
CACCTGAAAGCTCTAGGAAAAAAGAAGCAAACGTTCCCAAGAGGAGTAGA
CAACAGGAAATAATAAAACTTAGGACTGAAATCAATAAATTAGAAACTAC
AAAGAATCACCAAACCAAGAGCTTGGGTTTTTGTTTTGGTTTGGTTTTGG
GTTTTGGNTTTTNNCNNTTTTNTTTTTTTNTTNTCTTTTTTTTTCNTTTT
TTTNCTTTTTNCCTTTTTTTCTTCTTCCCTTTCTCTTCCCTCCTCTCTTT
TTTTTCCCTCCTTCCCTCTTCTCTCTCCCTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_h22.b1 MSMg01no174_h22.b1 CHROMAT_FILE:
MSMg01no174_h22.b1 PHD_FILE: MSMg01no174_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:22 2005
         (260 letters)



>mm_chr9_6185432_6186091
          Length = 660

 Score =  487 bits (252), Expect = e-142
 Identities = 258/260 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtaatttatcacttctcaaatcatgataatgcttttctcccctgaagattccttttc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agggtaatttttcacttctcaaatcatgataatgcttttctcccctgaagattccttttc 293

                                                                       
Query: 61  aatgacttgccaaggaaaggaaggtggctaactcattagctctgtgtccaaagatttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aatgacttgccaaggaaaggaaggtggctaactcattagctctgtgtccaaagatttgcc 233

                                                                       
Query: 121 aaccaatagctgctcaaaagcatttactcttgtaaaaaaataaataaataaaaatctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aaccaatagctgctcaaaagcatttactcttgtaaaaaaataaataaataaaaatctcca 173

                                                                       
Query: 181 agtcctcaaagttcctaaactggatcttcatgatctttacacagacatactgcatattta 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 172 agtcctcaaagttcctaaactggatcttcatgacctttacacagacatactgcatattta 113

                               
Query: 241 aagagacttaacacatgaaa 260
           ||||||||||||||||||||
Sbjct: 112 aagagacttaacacatgaaa 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)