BAC Information

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BAC

Clone NameMSMg01-174M10
Chromosome9 (Build37)
Map Location 119,282,865 - 119,283,161
singlet/doubletsinglet
Overlap geneXylb
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a
Downstream geneAcvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174M10.T7 (MSMg01no174_m10.b1)MSMg01-174M10.TJ (MSMg01no174_m10.g1)
ACCAG369975AG369976
length738758
length of high quality
(start - end)
300 (63 - 362)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no174_m10.b1 PHD_FILE: MSMg01no174_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:43 2005CHROMAT_FILE: MSMg01no174_m10.g1 PHD_FILE: MSMg01no174_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAATGTCACGCTTTTGAAAATGGAGTTTCAGATGGTTGT
AAGTTGCCATGCAGGTACTGGAAACTGAGCCCAGGGCCTCTCTCCAAGAG
CACTGAGCCTCCTTTATAGCCCTGTGGCTGGATCTGTGTCATCAAAGAAA
GAAGGGTCCTCTTTGAACCTAAGAGCCAGAAGGCAGCAGGGTCCATGTAA
GGAAACCGTGGTGCTTCCACCTCCTCCAAATACTCCCTCATACGCCCATC
ACACAGGGAGCCCGAGAGCCTGCTGTTCCGAGGCCTGCCAGGCAGCAACT
GTTCCCATGTTCTGTTAGCTTCCCCCCCCCCACCTGAGGCAACCTTGAGA
GAGGGTAGTTCTCACATACCTCAATCTCATGGCCCTTTCCAGGAAAAGAC
ATGCACCGCGCCGGTCCTTAGGATGGCAGCTTCTAAAAATATATACCATC
TTATTTATATAAATAATGTATTATTTATCACTTTTAATAATGCGTTGATA
TATTTGTCTGCGGCTATGCGCATATGAAGCTTGGCACCTCTATATCCCTT
ACCACGCTGCTGTATTCCCCGCCTCTGTCACGCCTTATCACCTGTGATCC
TCCACACTTGTCCGCCGCTTATTTATTGCTCACCTTGCTTTTCCCCCCCT
TGCTCCTTTCCACACTTATTTTCCAACCTTCTTCTTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGTACTCTTGAGAGGGTGTAAATG
GGAGACTCCAAGAGAGCCTGAGCACGCCTGCTGCTCTCCATGCTGCTGCT
GCTTTCTGTTGTTGCAGTTTGTCAAGTGGTCTTGAGCAAAGAGAAGAGAA
GAAATTAGATATCTTAATGACAAAGACTGGACTTGCTCCAAGGAACATGA
TGCCCCTAAGCCGAAGAAAGTAGTCTAAAGAGGTCTATGCCCCCTTTCCC
CTCTAACCTTCTTTCTCTCCTACCTATTGTTGGGGGTTGGAAGGGAGGTA
GATATGGGAATTTAAATAGTTTCCCANGCAACCCCCCTTTATTTCTGCCA
AATTTTTCAGTACAGCACACCCTCATAAAAAAAAAAAACATTTGGCCCTG
TGCTCAATCCCCTCCAACTTACATTATACAAGCTGATCGTGCTGTCCCCT
TTTTGTATTTTCTTTTGCCCACCTTAACCGCCCCTTGCTTTCCTTTCCCT
TTTTTCCCCCCCCTTTTTTTTTCCCCCCCCCCTTTTTTTTTCTTTGTTTT
TTTTTCCCCCTTCCCCCTCTCCCTTTTTTCACCTATTTTTTTTCCCTCCC
TTTTTGCCCCCCACTTTTCTTTTTCACCCCCCCCTCACCTTTTCCCCCCC
ATTTTTTTCCCCTTTTTCCCACCTACTCCATATATTTTNCCNATTTTTCC
CCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_m10.b1 MSMg01no174_m10.b1 CHROMAT_FILE:
MSMg01no174_m10.b1 PHD_FILE: MSMg01no174_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:43 2005
         (300 letters)



>mm_chr9_119282575_119283274
          Length = 700

 Score =  528 bits (273), Expect = e-154
 Identities = 291/297 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtcacgcttttgaaaatggagtttcagatggttgtaagttgccatgcaggtactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aatgtcacgcttttgaaaatggagtttcagatggttgtaagttgccatgcaggtactgga 528

                                                                       
Query: 61  aactgagcccagggcctctctccaagagcactgagcctcctttatagccctgtggctgga 120
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| 
Sbjct: 527 aactgagcccagggcctctctccaagagcactgagcctcctttccagccctgtggctggt 468

                                                                       
Query: 121 tctgtgtcatcaaagaaagaagggtcctctttgaacctaagagccagaaggcagcagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctgtgtcatcaaagaaagaagggtcctctttgaacctaagagccagaaggcagcagggt 408

                                                                       
Query: 181 ccatgtaaggaaaccgtggtgcttccacctcctccaaatactccctcatacgcccatcac 240
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 407 ccatgtaaggaaaccgtggtgcttccacctcctccaaatactccctcagatgcccatcac 348

                                                                    
Query: 241 acagggagcccgagagcctgctgttccgaggcctgccaggcagcaactgttcccatg 297
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 347 acagggagcccgagagcctgctgttctgaggcctgccaggcagcaactgttcccatg 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)