Query= MSMg01no175_k20.b1 MSMg01no175_k20.b1 CHROMAT_FILE:
MSMg01no175_k20.b1 PHD_FILE: MSMg01no175_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:48 2005
(311 letters)
>mm_chr9_108018111_108018821
Length = 711
Score = 551 bits (285), Expect = e-161
Identities = 300/305 (98%)
Strand = Plus / Plus
Query: 5 gaattcttcatcagtcatgtctgcccgggctgggggctgaggtgggaggggagacaagcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatcagtcatgtctgcccgggctgggggctgaggtgggaggggagacaagcc 264
Query: 65 gccttcgctgccgccttccacgtagtcatgcctcagctggctgccaaagtcatctgaaga 124
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccttcgctgctgtcttccacgtagtcatgcctcagctggctgccaaagtcatctgaaga 324
Query: 125 ctcagctgtgtcctgctgttccctctgacgtccccatgccaaggagtcgtcctcctctag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcagctgtgtcctgctgttccctctgacgtccccatgccaaggagtcgtcctcctctag 384
Query: 185 aatgtcccccagttcctcatccgagtcgaaggcctcgggcatgatggacagggagtgagg 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 aatgtcccccagttcctcatccgagtcgaaggcctcgggcgtgatggacagggagtgagg 444
Query: 245 acgccgtttctggtcttcaaccgcactgctgctgctgcggggtggcttgctccactctgc 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 445 acgccgtttctggtcttcaaccgcactgctgctgctgcggggtggcttgctccattccgc 504
Query: 305 actgg 309
|||||
Sbjct: 505 actgg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no175_k20.g1 MSMg01no175_k20.g1 CHROMAT_FILE:
MSMg01no175_k20.g1 PHD_FILE: MSMg01no175_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:48 2005
(283 letters)
>mm_chr9_108161240_108161922
Length = 683
Score = 478 bits (247), Expect = e-139
Identities = 265/273 (97%), Gaps = 4/273 (1%)
Strand = Plus / Minus
Query: 1 cagagctatcactttggctacgaagaacactttgtgtctttgtaacccctaggattgatg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 333 cagagctatcactttggctacgaagaacactttgtgtctttgtaactggtaggattgatg 274
Query: 61 agccacttgttcatcctaggcagggactttaccttgagctaccccaactacattgctacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agccacttgttcatcctaggcagggactttaccttgagctaccccaactacattgctacc 214
Query: 121 tcttatcccccagttttgtttttttgaggcaaactcttactagctcaagctagctgcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tcttatcccccagttttgtttttttgaggcaaactcttactagctcaagctagctgcaga 154
Query: 181 cttgcagtcctcccatgtcagtatctggagcagtagaattaggagtctgtaccatcgtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cttgcagtcctcccatgtcagtatctggagcagtagaattaggagtctgtaccatcgtga 94
Query: 241 ctggtttccataactccccccacccccgccccc 273
|||| |||||||||||||||| ||||||||
Sbjct: 93 ctggcttccataactcccccc----ccgccccc 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
