BAC Information

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BAC

Clone NameMSMg01-176B18
Chromosome9 (Build37)
Map Location 76,559,682 - 76,560,287
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176B18.T7 (MSMg01no176_b18.b1)MSMg01-176B18.TJ (MSMg01no176_b18.g1)
ACCAG370903AG370904
length1,2441,287
length of high quality
(start - end)
285 (474 - 758)610 (67 - 676)
definitionCHROMAT_FILE: MSMg01no176_b18.b1 PHD_FILE: MSMg01no176_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:27 2005CHROMAT_FILE: MSMg01no176_b18.g1 PHD_FILE: MSMg01no176_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGTCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCCCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTCC
ACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCCGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
GTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGTATCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCATTTTTTTTTTCCCCCCCGAAAATATGGTACATCTACACAATAAAA
AACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ATTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAG
GATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAA
AATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAA
AACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATTAAAG
GGTGGACCATGTAGAGACTGCCTTATCCAGGGATCCACCCCATAATCAGC
ATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGA
CCCAGATGTAGCTGTCTCTTGTGAAACTATGCCGGNGCCTAGCAAACACA
GAAGTGGATGCCCCAGTCCGTTTATGTATGGATCCCAGGGGTTCCCAATG
GGGGACTATGAGAAAGTACCCAGGAGTTTTTGGGTTCTGCTCCCTCTTGG
TGGCTCTCAATTATTGATTTATCTTACTCCCGAGATTCTTGATTCTTTTT
TTATTTTTATAAAAATTCCCTTTGTCCTCTCTCGTTTAAAAATACTCTTT
GTATCTCTCTTTTTTTTTCCCCTAAACTGTAATTCCCGCTTTTTACTGTT
CTGCCTCCCTTATTCTTTTTTTTTCATTCTTTTCTTTCTATCTA
NNNGGGCAGACTGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTCTCTCTTTACCTTAGACAAGGTCTTTAAAAG
ATTAAGGGAATTTTTCAGGCTGCTGAGGGTGACAAAGTAGGGCTGAGCCT
CCTTCCTTTTCCTCCTTGACAAAATGACAAATTTCTCAGAGGATGGAAGT
AGAAGAAATGCCTTATCAGCTCATTACAGTGAGATGTTCTCTACTTACAA
ATGAAGAATAGTCGAGGGCATTCAGTGCTTTTTTTTAGATGCTTACTGAC
AGTCTTAACACCTTACATACATCATTTTTCCTCAAAAATGTGTTAGAAAT
GATGAGGAAGTTGTACACATAGCCAGGAATAGCTTTATGCAAAGTCAAAG
ATTACCAAAATGCCACATCTTTTACCAACTTTGGTTTTCTCAGGAAAGTA
TAGATTTTAGTACAGAGTCACAGCAGTCGTTAAATAATCTCAAAGGTGGT
AGTTGTAAGAAAAAAAAAAATCCCTGCTACAAGGAGAAGACATATGTAGA
AACCAAACTTGCCCCTAAACCTATGTTTTATTTTATGAAATTCATATATA
AAGATTTGATATGTTTTATATATTAAATAGGTAAAGTTTAAATTAACAAA
GAACAGGCAGCAATTTTGGATGAAATGATACTGTTATGACATGCGAAGAG
AATTTTTAATCCAACAACCCGGTTGCTCTTCTAGGTCTTTTGTAACCTGA
CTGGAATGATACCAATCTTTTATTCCTTCTGATTGGATTGGAGACACTCA
TACCTTAAGTGTATTAACCATTTTTATTTTGTATCATATCTTGCTATCTT
CAGTTTGTATAACAATTGTATCCTTGTTTTGAAGTTGTAGTCCAATTTGA
TCTCCCTTCTTATCTATTTTTAATCATTTATTTGTTTAATTTGATTTTTC
AGTATTTTATTTGTCCACTCCTTCTCTCAAACATCATCCTCTTTACTCTT
CTCTTCCTTCACTCCTCTCTTCTGTTTTTTTTATCTTTTCTATCATTTCT
TTTTCTTCTTTTTTTCCGTTTTCTATTCCTCCCCTCCATTTTTATTTCTT
TTCCTTACTTCTTCTTCACCATTCACTTCCTCCTCCTCTTCTTTCCCTCT
CTTATTTATATCTTCCTTCTCTCCTTCTTTCTTCTTCTCCTCTCTATTTT
CCCTCCTCTTCTTCTTCTTTATATACTCTTCACTCTTTTACTCCTCTCTC
TTCTCTTTTCTAATCTTCCTCATCTCTTATTCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_b18.g1 MSMg01no176_b18.g1 CHROMAT_FILE:
MSMg01no176_b18.g1 PHD_FILE: MSMg01no176_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:27 2005
         (610 letters)



>mm_chr9_76559480_76560487
          Length = 1008

 Score = 1118 bits (578), Expect = 0.0
 Identities = 600/608 (98%), Gaps = 2/608 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tctctctttaccttagacaaggtctttaaaagattaagggaatttttcaggctgctgagg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tctctctttaccttagacaaggtctttaaaagattaagggaatttttcaggctgctgagg 262

                                                                       
Query: 63  gtgacaaagtagggctgagcctccttccttttcctccttgacaaaatgacaaatttctca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtgacaaagtagggctgagcctccttccttttcctccttgacaaaatgacaaatttctca 322

                                                                       
Query: 123 gaggatggaagtagaagaaatgccttatcagctcattacagtgagatgttctctacttac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaggatggaagtagaagaaatgccttatcagctcattacagtgagatgttctctacttac 382

                                                                       
Query: 183 aaatgaagaatagtcgagggcattcagtgcttttttttagatgcttactgacagtcttaa 242
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 383 aaatgaagaatagttgagggcattcagtgcttttttttagatgtttactgacagtcttaa 442

                                                                       
Query: 243 caccttacatacatcatttttcctcaaaaatgtgttagaaatgatgaggaagttgtacac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 443 caccttacatacatcatttttcctcaaaaatgtgttagaaatgatgaggaagttgtacat 502

                                                                       
Query: 303 atagccaggaatagctttatgcaaagtcaaagattaccaaaatgccacatcttttaccaa 362
           |||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||
Sbjct: 503 atagccaggaatagctttatgcaaagtcaaagacaaccaaaatgccacgtcttttaccaa 562

                                                                       
Query: 363 ctttggttttctcaggaaagtatagattttagtacagagtcacagcagtcgttaaataat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttggttttctcaggaaagtatagattttagtacagagtcacagcagtcgttaaataat 622

                                                                       
Query: 423 ctcaaaggtggtagttgtaagaaaaaaaaaaatccctgctacaaggagaagacatatgta 482
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 623 ctcaaaggtggtagttgtaagaaaaaaaaa--tccctgctacaaggagaagacatatgta 680

                                                                       
Query: 483 gaaaccaaacttgcccctaaacctatgttttattttatgaaattcatatataaagatttg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaccaaacttgcccctaaacctatgttttattttatgaaattcatatataaagatttg 740

                                                                       
Query: 543 atatgttttatatattaaataggtaaagtttaaattaacaaagaacaggcagcaattttg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatgttttatatattaaataggtaaagtttaaattaacaaagaacaggcagcaattttg 800

                   
Query: 603 gatgaaat 610
           ||||||||
Sbjct: 801 gatgaaat 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1008
Length adjustment: 10
Effective length of query: 600
Effective length of database: 998
Effective search space:   598800
Effective search space used:   598800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)