BAC Information

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BAC

Clone NameMSMg01-176G03
Chromosome9 (Build37)
Map Location 12,058,737 - 12,059,429
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039989
Downstream geneLOC622505, LOC100039680, LOC665285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176G03.T7 (MSMg01no176_g03.b1)MSMg01-176G03.TJ (MSMg01no176_g03.g1)
ACCAG371097AG371098
length1,2011,209
length of high quality
(start - end)
691 (132 - 822)420 (129 - 548)
definitionCHROMAT_FILE: MSMg01no176_g03.b1 PHD_FILE: MSMg01no176_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:03 2005CHROMAT_FILE: MSMg01no176_g03.g1 PHD_FILE: MSMg01no176_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCCCTNNNNNNAGACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGGCCAACTCTCATGACCCTTTAAGACGTTCCAAGTGT
GACTTCCTCACTGTTAGGCCCTTTCAAAGTGTGACTTTCTCAGTGTATCA
GGCTCTCATGATATGCACGAATGTTAGAAGTCTAACTCTCTCACTGTATT
AATCAATTCAATGGCCAATGTCATCTGAACACACCCTTACAGACTTACAC
AGAAATAATATAACCTTGGAACCTTGCAGCAATCAAGCCCACATACCAAA
TTAACACAGAAAGTAACCTCTGAAACATTAATGTATTCTAGTTTTATTTT
AAGCCTTTACTGCTGTTTAATATACTATTAGTTTTCTTCATGTTTGAGAA
AGAACTGATTTTTTGCTAAAATATTATGTGTTACATTGGCATCTGATATT
AAAAGTTGTAACATAGATTTTGGGCATAATTCTACACTTTAATGCTATGA
ATTAATATTTGGGATTTGATCTGTTCATCTCCAAACTGTGTTATCATGCA
TAACCATCAATGAGACCAAATTTCCAACTTGAGCATGTACTGCGGATGTT
TTGCTAAATAATCTTGTAACCAAACTGTTTCCTAAACATTATTTAAGGCT
TGTAGCATGGAGAAGAGAACCAGGAAATACTGCTCAGGGCATATGCGATG
AACCTTGCAACCATACCTCTGGCCATGGCCACCTGTGAAGGGTGGCAAGC
ATGACCATGGCTGGCCTTGCGCTCTCTCTAATTCACTGTCTTCCTAAAAA
CTGTTAGATTGTATTTCTAAAGCAAGGCAAGCCCCCTAGGGACTGTTTCC
TTATTTAGCCAATTCCTTCTCCTGAGGCTAATTACAAAGGTCCAGCTACC
AAAGGATTGAAGTCCAGTAATCAAAAGCCTCTTTTGGATCACCTAGTTAA
CATGCTCAATTAAAATTCCATGCCTCATCCTAACAGAATTTCCCCCTATA
CCTTTATAAACAGCCCTTTTTCAATAAGGCCAGGTCTGGCCTCCTCCCTT
ACTAAAAAAAAGATCCTTTTGTCCCCTTCTAAGAACAATAGCCTCTCATT
TCCTTCTCCTTTTGGTCCCTTTTTTTCCCCCTCCTTTTTTCCCTTTCCCT
TTTCTTCTTCCCCCTGAGTTTTTGTCCTTAATATCTTGCAATTTTTCCCC
T
NNNTTATGAATGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTATAAGTCTCCATCTCTGGNAATTGAGAGT
TTTGGTGGCCTTAGAAGCCTGTGCTAGNATTTGTGTTTTCTTAGGGCCTA
TATAACATCTATCCAGGATCTTATGGCTTTCATAGTCTCTGGTGAGAAGT
CTGGTATAATTCTAATAGGTCTCCCTTTATATGTTACTTGACCTTTTTTC
CTTACTGCTCTTAATACTCTATCTTTATTGACTGCATTTGTTGTTCTAAT
TATTATGTGTCGGGAGGAATTTCCTTTCTGGTCCAGTCTATTTGGAGTTG
TGTAGGCTTCTTGTATGTTCATGGGCATCTTTTCTTTAGGTTAGGGAATT
TTTTTTCTATAATTTTGTTGAAGATACTTACAGTTGAAAATCTTCATTCT
CATCTATACTTATTATCTTAAGGTTTGGTCTTCTCATTATGTCCTGCATT
TCCTGTATGTTTTGAGTTAGGATCTTTTTGCATTTTGCATTTTCTTTGAT
TGTTGTGCCCATGTTCTCTCTGGAATCTTCTGCACCTGAGATTCTTTCCT
CCCTCTCTTCTATTCTGTTGCTGATGCTCACATCTATAGTTTCTGATTTC
TTTCTAAGGATTTCTATCTCCTGAAATGTCCTCCCTTTGGCTCTTCTTCA
TTAATTCCTACTTTCAGCTTTTAAATATTTGTATGGTTTTTGTTTCTCTT
TCCGTTTCCCCGTTTTGGCTTACTCTTTTCCCTGTTACTTCTTTTTTTTT
CATTTTTTTTTGTTTTCTCTTTTTTCATATACTTTCTATTCTTTTTTTTT
TCTTTTGTTCTCCCTTTTTTATATTTCCTTATCTCATATTTTTTTACTTG
TTTCTTTTTTTTATCCTATCATACCCTTTTCTTTTCTCTTTCTTTTTTTT
CTTCTTTTTTTTTTTTTCTTCTCTTCCTTAATTTTACTTGTCTTTCTCTT
TTCTTTCTTTTTTCTTTCCTTTTTTTCTCTCTTTTCTTTATTCTACTCTT
TTTTTTTTTTTCTCTATTTCTATTGCTCTTCTCCTACTTTCTTTCTCGTT
TTTTCTCTTTTCTCTATTTCTTTTTTCTTTTTATTTATTTTTCTATTTTT
ATCTTTTATCTTTTTTTTTTCTACTTTCTTTTCTCTATATTGCTTCTTCT
TTCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_g03.b1 MSMg01no176_g03.b1 CHROMAT_FILE:
MSMg01no176_g03.b1 PHD_FILE: MSMg01no176_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:03 2005
         (691 letters)



>mm_chr9_12058514_12059604
          Length = 1091

 Score = 1251 bits (647), Expect = 0.0
 Identities = 681/697 (97%), Gaps = 10/697 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactttctcagtgtatcaggctctcatgatatgcacgaatgttagaagtctaactctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tgactttctcagtgtatcaggctctcatgatatgcacgaatgttagaagtctaactctct 857

                                                                       
Query: 61  cactgtattaatcaattcaatggccaatgtcatctgaacacacccttacagacttacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cactgtattaatcaattcaatggccaatgtcatctgaacacacccttacagacttacaca 797

                                                                       
Query: 121 gaaataata--taaccttggaaccttgcagcaatcaagcccacataccaaattaacacag 178
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaaataatatttaaccttggaaccttgcagcaatcaagcccacataccaaattaacacag 737

                                                                       
Query: 179 aaagtaacctctgaaacattaatgtattctagttttattttaagcctttactgctgttta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaagtaacctctgaaacattaatgtattctagttttattttaagcctttactgctgttta 677

                                                                       
Query: 239 atatactattagttttcttcatgtttgagaaagaactg----attttttgctaaaatatt 294
           ||||||||||||||||||||||||||||||||||||||    |    |||||||||||||
Sbjct: 676 atatactattagttttcttcatgtttgagaaagaactgagaca----ttgctaaaatatt 621

                                                                       
Query: 295 atgtgttacattggcatctgatattaaaagttgtaacatagattttgggcataattctac 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atgtgttacattggcatctgatattaaaagttgtaacatagattttgggcataattctac 561

                                                                       
Query: 355 actttaatgctatgaattaatatttgggatttgatctgttcatctccaaactgtgttatc 414
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 560 actttaatgctatgaattaatatttgggatttgatctgttcaactccaaactgtgttatc 501

                                                                       
Query: 415 atgcataaccatcaatgagaccaaatttccaacttgagcatgtactgcggatgttttgct 474
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atacataaccatcaatgagaccaaatttccaacttgagcatgtactgcggatgttttgct 441

                                                                       
Query: 475 aaataatcttgtaaccaaactgtttcctaaacattatttaaggcttgtagcatggagaag 534
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 aaataatcttgtaaccaaactgtttcctaaacattatttaaggcttatagcatggagaag 381

                                                                       
Query: 535 agaaccaggaaatactgctcagggcatatgcgatgaaccttgcaaccatacctctggcca 594
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 380 agaaccaggaaatactgctcaggggatatgggatgaaccttgcaaccatacctctggcca 321

                                                                       
Query: 595 tggccacctgtgaagggtggcaagcatgaccatggctggccttgcgctctctctaattca 654
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 320 tggccacctgtgaagggtggcaagcatgaccatggctgaccttgcgctctctctaattca 261

                                                
Query: 655 ctgtcttcctaaaaactgttagattgtatttctaaag 691
           |||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgtcttcctaaaaactgttagattgtatttctaaag 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)