Query= MSMg01no176_j03.b1 MSMg01no176_j03.b1 CHROMAT_FILE:
MSMg01no176_j03.b1 PHD_FILE: MSMg01no176_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:29 2005
(672 letters)
>mm_chr9_77029410_77030481
Length = 1072
Score = 1230 bits (636), Expect = 0.0
Identities = 657/664 (98%), Gaps = 1/664 (0%)
Strand = Plus / Plus
Query: 1 gaataacattgaaactctgaaatttcaactttaaatatccctccttcaaaattctttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaataacattgaaactctgaaatttcaactttaaatatccctccttcaaaattctttctt 260
Query: 61 tacccataccttcatgtctctaatacgtctactatcagctatattacagtgagatttcta 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactcataccttcatgtctctaatacgtctactatcagctatattacagtgagatttcta 320
Query: 121 aattgtttgccctcactaactttattctggtcctattatctcttagtttactattaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgtttgccctcactaactttattctggtcctattatctcttagtttactattaataa 380
Query: 181 aatattaattaatgttcaattaataattaatatgaattgatgtcaaacctcatgtttaat 240
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 381 aatattaattaatgttcaattaataattaatatgaattgatatcaaacctcgtgtttaat 440
Query: 241 atttcatttatcctgttttcctctctttatgtgacacatctgcttgtaaaacaagaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 atttcatttatcctgttttcctctctttatgtgacacatctgcttgtaaaacacgaacag 500
Query: 301 aaatcctacatgtgctctctgatccatttatctctattctatctcacatgtaaatctgag 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 aaatcctacatgtgctctctgatccatttatctctattctatctcagatgtaaatctgag 560
Query: 361 aggtaaaatatttctgtggaactctcaaccacagcttgatttcatcttaaataaatggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtaaaatatttctgtggaactctcaaccacagcttgatttcatcttaaataaatggcc 620
Query: 421 atcaacttcacctgtgcacaatccagatggtttgataatcccctaatattttcccccctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 atcaacttcacctgtgcacaatccagatggtttgataatcccctaatattttccccc-tt 679
Query: 481 aggtctactttctgagattacagaaacagatttgagcttcaagtgtgacccaaaagatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggtctactttctgagattacagaaacagatttgagcttcaagtgtgacccaaaagatat 739
Query: 541 cacttgctcttcatgatgattagtcttcattgttaacttgtaagattctggaatcagata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cacttgctcttcatgatgattagtcttcattgttaacttgtaagattctggaatcagata 799
Query: 601 actgtgctaagtggtggcatgttttggacattcaagtcatagtaatgaggttgccagggt 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 actgtgttaagtggtggcatgttttggacattcaagtcatagtaatgaggttgccagggt 859
Query: 661 tcaa 664
||||
Sbjct: 860 tcaa 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_j03.g1 MSMg01no176_j03.g1 CHROMAT_FILE:
MSMg01no176_j03.g1 PHD_FILE: MSMg01no176_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:29 2005
(186 letters)
>mm_chr9_77183674_77184259
Length = 586
Score = 331 bits (171), Expect = 2e-95
Identities = 180/183 (98%)
Strand = Plus / Minus
Query: 1 taagtccagccacttggagaatgggaagctcctttaaggttagggacctcatgttcttgc 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taagtccagccacctggagaatgggaagctcctttaaggttagggacctcatgttcttgg 278
Query: 61 cgcttcattatctgggtcaatgtggagtggtactcttaaaactttgagctatatagacat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgcttcattatctgggtcaatgtggagtggtactcttaaaactttgagctatatagacat 218
Query: 121 ggtacgtatatacctaagtgtgtgtgtgtgcgtatgtgtgtgtgtgtgtgtgtgtgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ggtacgtatatacctaagtgtgtgtgtgtgcgtatgtgtgtgtgtgtgtgtgtgtgtgtg 158
Query: 181 tgt 183
|||
Sbjct: 157 tgt 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space: 102884
Effective search space used: 102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
